BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZC06FM1.SCF screened BAC_end
(939 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1789 1388 0.0
>3x_Contig1789
Length = 30977
Score = 1388 bits (700), Expect = 0.0
Identities = 820/850 (96%), Gaps = 8/850 (0%)
Strand = Plus / Minus
Query: 87 catggcagacgcattccgaataacgaagagtatgacgataatgattccattgaagaaggc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16205 catggcagacgcattccgaataacgaagagtatgacgataatgattccattgaagaaggc 16146
Query: 147 ggatttttttcaaaattgtgctgtggaatttgctagcccattttttaggcccatgacgag 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16145 ggatttttttcaaaattgtgctgtggaatttgctagcccattttttaggcccatgacgag 16086
Query: 207 aagatgtattataagttaatttaaccctccttacctatttgttgtcctgttgtaagagct 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16085 aagatgtattataagttaatttaaccctccttacctatttgttgtcctgttgtaagagct 16026
Query: 267 gaaaaggcgttgatcgtctgggttctccaataacaggcacacacggatacatttaacgct 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16025 gaaaaggcgttgatcgtctgggttctccaataacaggcacacacggatacatttaacgct 15966
Query: 327 gagcgttttgcttttataattttttttccaaggcaagaaggaacctttcatatctttgtg 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15965 gagcgttttgcttttataattttttttccaaggcaagaaggaacctttcatatctttgtg 15906
Query: 387 tctctcccattcccatgatctttctcgctcggttcgcatttattagacaaacttacaccc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15905 tctctcccattcccatgatctttctcgctcggttcgcatttattagacaaacttacaccc 15846
Query: 447 ttgctttagctgaggagaactgacaaattacatgaacatccagatatgtaaatagaaata 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15845 ttgctttagctgaggagaactgacaaattacatgaacatccagatatgtaaatagaaata 15786
Query: 507 catattcataatattttactttactttaatataaattgtaatttagtttcaaggaactta 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15785 catattcataatattttactttactttaatataaattgtaatttagtttcaaggaactta 15726
Query: 567 aataacgaattaagcacttgaagagtatatttaatcattgaattatttattagctgatag 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15725 aataacgaattaagcacttgaagagtatatttaatcattgaattatttattagctgatag 15666
Query: 627 taagttaaatttgaagtgaatgcaatgcaatatattttncacatgggtaacaggtttcaa 686
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 15665 taagttaaatttgaagtgaatgcaatgcaatataatttccacatgggtaacaggtttcaa 15606
Query: 687 tgaattgcanaaggtgattgaggggagtgaacgggtatcat-agccttcgcatacaaatg 745
||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct: 15605 tgaattgcagaaggtgattgagggaggtgaacgggtatcataagccttcgcatacaaatg 15546
Query: 746 t-gcatcgctgcctcttct-atgccagacagataaggatttgtgggtat-tcgaatgaat 802
| ||||||||||||||||| |||||||||||| ||| |||||||||| |||||||||
Sbjct: 15545 tggcatcgctgcctcttctaatgccagacagaagagggattgtgggtatatcgaatgaa- 15487
Query: 803 tgggttttaccgtcaaac-tgctatctatggcaggcgtcattgaataatgggctttgtat 861
|||||||||||||||||| ||||||||| ||||||||||||| | ||||||||| ||||
Sbjct: 15486 tgggttttaccgtcaaacatgctatctagtgcaggcgtcattggagaatgggcttcgtat 15427
Query: 862 tccaaaatatcctcag-atcttcaaac-ccgaattgctactattcctgggtggttcatct 919
|||| | ||||||||| |||||||||| | ||||||||||||| | ||| || |||||||
Sbjct: 15426 tccagagtatcctcagaatcttcaaacgcagaattgctactatccttggttgtttcatct 15367
Query: 920 gaaccggagt 929
|||| |||||
Sbjct: 15366 gaactggagt 15357
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6560
Number of Sequences: 1807
Number of extensions: 6560
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)