BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZC06RM1.SCF screened BAC_end
(960 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1746 1152 0.0
>3x_Contig1746
Length = 26672
Score = 1152 bits (581), Expect = 0.0
Identities = 652/673 (96%), Gaps = 4/673 (0%)
Strand = Plus / Minus
Query: 38 ctttgggatcctagtcaagaaacgtcaggatagttctaactacgatacgactaatttggc 97
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20365 ctttgggatcctagtcaagaaacgtcaggatagttctaactacgatacgactaatttggc 20306
Query: 98 tcctttggatcccaacggtccaatattttgggggaaaccacctggtagtggtatcttgga 157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20305 tcctttggatcccaacggtccaatattttgggggaaaccacctggtagtggtatcttgga 20246
Query: 158 tggtgatttaaattcaaatgtcaatggaaatcacatccttagagaaaagtttgatattta 217
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 20245 tggtgatttaaattcaaatgtcaatggaaatcacatccttagagaaaagtttgagaaata 20186
Query: 218 tgccaaaattatttacaggtttaacaattcaagacaatcacataatgacgattttcaatt 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20185 tgccaaaattatttacaggtttaacaattcaagacaatcacataatgacgattttcaatt 20126
Query: 278 aaccaaagagttcattgccatctttcagaatacgaccgactcgaagtatagacagctact 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20125 aaccaaagagttcattgccatctttcagaatacgaccgactcgaagtatagacagctact 20066
Query: 338 tgacggttgggagattatagataatgcaacaaatcaatccccaaatattgttgagttttc 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20065 tgacggttgggagattatagataatgcaacaaatcaatccccaaatattgttgagttttc 20006
Query: 398 caaaaaatacctagaaaaccagttcttgagctatgttgacaatttgtattcaaagaatcc 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20005 caaaaaatacctagaaaaccagttcttgagctatgttgacaatttgtattcaaagaatcc 19946
Query: 458 aagcgaaggtttaccgaccaatgttaacaaaattagagcatttattgacctcaaactgaa 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19945 aagcgaaggtttaccgaccaatgttaacaaaattagagcatttattgacctcaaactgaa 19886
Query: 518 gactggtgaaaatacttggaaantttacaatcttacgattgtgaatgganttcccgtatg 577
|||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||
Sbjct: 19885 gactggtgaaaatacttggaaatttaacaatcttacgattgtgaatggaattcccgtatg 19826
Query: 578 ggcctttgatttttatttgctaaggnnctgtttacccgca-gacgcgctagaagtagttg 636
|||||| |||||||||||||||| ||||| ||||| |||||||||||||||||||
Sbjct: 19825 ggccttgattttttatttgctaagggctggttta-ccgcaggacgcgctagaagtagttg 19767
Query: 637 ttaacaacanattgagtttcaaaaaagtggagnncatctttcctaacatacntcaaagct 696
||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 19766 ttaacaacaaattgagtttcaaaaaagtggagca-atctttcctaacatacttcaaagct 19708
Query: 697 tattgtaacgtct 709
|| ||||||||||
Sbjct: 19707 ta-tgtaacgtct 19696
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8743
Number of Sequences: 1807
Number of extensions: 8743
Number of successful extensions: 97
Number of sequences better than 1.0e-20: 1
length of query: 960
length of database: 10,358,551
effective HSP length: 16
effective length of query: 944
effective length of database: 10,329,639
effective search space: 9751179216
effective search space used: 9751179216
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)