BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZC07FM1.SCF screened BAC_end
(974 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1806 1237 0.0
>3x_Contig1806
Length = 53694
Score = 1237 bits (624), Expect = 0.0
Identities = 682/695 (98%), Gaps = 6/695 (0%)
Strand = Plus / Plus
Query: 87 aatcagtctggtggttttcataaactgtgtgatatggctggcactgtaaaaaaaacttga 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5407 aatcagtctggtggttttcataaactgtgtgatatggctggcactgtaaaaaaaacttga 5466
Query: 147 gatctaaaatgaaagctcaaagagaaatagaagaaaaaatttatcccccagaacaaacct 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5467 gatctaaaatgaaagctcaaagagaaatagaagaaaaaatttatcccccagaacaaacct 5526
Query: 207 gtcacaacgaagaaagtggactcttagattttagaaaagtaaatcacacagccgcttcct 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5527 gtcacaacgaagaaagtggactcttagattttagaaaagtaaatcacacagccgcttcct 5586
Query: 267 tcggtgacctagctactgaaaggtatcacagtatacaacgcaattcaattacccattagt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5587 tcggtgacctagctactgaaaggtatcacagtatacaacgcaattcaattacccattagt 5646
Query: 327 ttttgtgttccgtgtgatatttcccgtgtgaactctgtaagctgattttttactttcgct 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5647 ttttgtgttccgtgtgatatttcccgtgtgaactctgtaagctgattttttactttcgct 5706
Query: 387 ttgttcaatattatcaaagtggtaagcagtttttgattgaccaaccgattttgcactctc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5707 ttgttcaatattatcaaagtggtaagcagtttttgattgaccaaccgattttgcactctc 5766
Query: 447 tctgttttcctacaagcatcatttctttccttagcaatggactaccaacaatctcatcaa 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5767 tctgttttcctacaagcatcatttctttccttagcaatggactaccaacaatctcatcaa 5826
Query: 507 gtcgactacattagtactgtcaattcagtaaattcgcagttgcaggactttggtatagga 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5827 gtcgactacattagtactgtcaattcagtaaattcgcagttgcaggactttggtatagga 5886
Query: 567 tccactattggtagtgccaatcctatcagcgggtcgtcaactccgttaggtggtgtaccg 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5887 tccactattggtagtgccaatcctatcagcgggtcgtcaactccgttaggtggtgtaccg 5946
Query: 627 catatacacaggtcagtttctttgatggatactttgggaatacaaagaactcattctcca 686
|| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct: 5947 caaatacacaggtcagtttctctgatggatactttgggaatacaaagaactcaatctcca 6006
Query: 687 tttcataaacgctcctgggaatgattcttcaagcatttttttctcagcagactttctatc 746
|| ||| ||||||||||||||||||||| |||||| |||||||||||||||| ||||||
Sbjct: 6007 ttccat-aacgctcctgggaatgattctccaagca-ttttttctcagcagac-ttctatt 6063
Query: 747 catttggaacatgaatttccggggatcaatactgg 781
|| |||||||||||||| | ||||||||||||||
Sbjct: 6064 ca-ttggaacatgaatt--ccgggatcaatactgg 6095
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6546
Number of Sequences: 1807
Number of extensions: 6546
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 974
length of database: 10,358,551
effective HSP length: 16
effective length of query: 958
effective length of database: 10,329,639
effective search space: 9895794162
effective search space used: 9895794162
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)