BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZC08FM1.SCF screened BAC_end
(906 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1737 1205 0.0
>3x_Contig1737
Length = 17214
Score = 1205 bits (608), Expect = 0.0
Identities = 698/719 (97%), Gaps = 7/719 (0%)
Strand = Plus / Minus
Query: 86 gacaacaccatctctcactggagtaccccatggatactgggcaatgtaagtcaaaggaga 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7752 gacaacaccatctctcactggagtaccccatggatactgggcaatgtaagtcaaaggaga 7693
Query: 146 tccgtagaagcttgctgccaaagtagcgtcaccatccaagtgttggagcaattgtttgta 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7692 tccgtagaagcttgctgccaaagtagcgtcaccatccaagtgttggagcaattgtttgta 7633
Query: 206 caacaattgggttcatatagcacctgacacagctgatccaacagctgagccgattctgta 265
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7632 caacaattgggtccagatagcacctgacacagctgatccaacagctgagccgattctgta 7573
Query: 266 catggtgtaactcaatgcggtgacagtggccatgttttcatgagaagtgacggattggag 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7572 catggtgtaactcaatgcggtgacagtggccatgttttcatgagaagtgacggattggag 7513
Query: 326 ggacacggtgactgggtaagtgaacatggtggtaccgagaccccaaacgactagcgcacc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7512 ggacacggtgactgggtaagtgaacatggtggtaccgagaccccaaacgactagcgcacc 7453
Query: 386 gatgatacctttatcagaattttgaccggatctgaaatggaacaagatacccattgcgac 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7452 gatgatacctttatcagaattttgaccggatctgaaatggaacaagatacccattgcgac 7393
Query: 446 catccatagggaacaaccagcgatgatgaatggctttaatctggtgaatctagtgatgaa 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7392 catccatagggaacaaccagcgatgatgaatggctttaatctggtgaatctagtgatgaa 7333
Query: 506 tagcgcatagaaaggcgaaaatacggtggaagtgaaggtactgacactggaaattctggt 565
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7332 tagcgcaaagaaaggcgaaaatacggtggaagtgaaggtactgacactggaaattctggt 7273
Query: 566 ggcagaagtgacactttcattcacagcaaccatcaagattgtgtacaagtaacctgcggc 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7272 ggcagaagtgacactttcattcacagcaaccatcaagattgtgtacaagtaacctgcggc 7213
Query: 626 catggtgaagatgaagntgatcaagatggc-atacacatagcagccccaataccacggtc 684
|||||||||||||||| ||||||||| ||| ||||||| |||||||| ||||||||||||
Sbjct: 7212 catggtgaagatgaagttgatcaagaaggcaatacacaaagcagcccaaataccacggtc 7153
Query: 685 tctcaaacac-tggatggagcaatttgttcacgagcccatttggatt-ccatgcgataag 742
|||||| || || ||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 7152 tctcaacaacttgaatggagcaattggttcacgagcccatttggattcccatgcgataaa 7093
Query: 743 aaatgggatc-agacgaaacct-agatgaa-ggagcattgat-tgtggattgttccatt 797
||||||||| ||||||||||| ||||||| |||||| |||| ||||||||||||||||
Sbjct: 7092 gaatgggatcaagacgaaacctaagatgaatggagcaatgatatgtggattgttccatt 7034
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5102
Number of Sequences: 1807
Number of extensions: 5102
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 906
length of database: 10,358,551
effective HSP length: 16
effective length of query: 890
effective length of database: 10,329,639
effective search space: 9193378710
effective search space used: 9193378710
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)