BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZC08RM1.SCF screened BAC_end
(903 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig490 519 e-147
3x_Contig835 385 e-106
>3x_Contig490
Length = 1611
Score = 519 bits (262), Expect = e-147
Identities = 265/266 (99%)
Strand = Plus / Minus
Query: 44 atattctatatattttgcccttttataacgtctacgtgttctaatatcagattactgtgt 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 atattctatatattttgcccttttataacgtctacgtgttctaatatcagattactgtgt 207
Query: 104 tttgttgggtcaaattcagtatcctgatccgaattatcttgttcaaattcctttgtttta 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 tttgttgggtcaaattcagtatcctgatccgaattatcttgttcaaattcctttgtttta 147
Query: 164 tctgttctaaaatcaggatcctggtttagggcagattcagtgacaaaatcagcaacgtct 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 tctgttctaaaatcaggatcctggtttagggcagattcagtgacaaaatcagcaacgtct 87
Query: 224 acttcctctataatcaaattagagtaagtagttggcatgtataggtattgacagcttctt 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86 acttcctctataatcaaattagagtaagtagttggcatgtataggtattgacagcttctt 27
Query: 284 tatgctttcttgagtctttcccgtag 309
|| |||||||||||||||||||||||
Sbjct: 26 taggctttcttgagtctttcccgtag 1
>3x_Contig835
Length = 2829
Score = 385 bits (194), Expect = e-106
Identities = 346/380 (91%), Gaps = 14/380 (3%)
Strand = Plus / Plus
Query: 355 atactttaatgtgaaatcttntgagatttttttagttagcgactgatgatacattttaaa 414
||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||
Sbjct: 1 atactttaatgtgaa-tcttttgagatttttttagttagcgactgaggatacattttaaa 59
Query: 415 aacaaaggtcctcataaaacatataagataggagcatcgtccgaattagataattataag 474
||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 60 aacaaaggtcctcataaaacaaataagaaaggagcatcgtccgaattagataattataag 119
Query: 475 gtctagttaccagtagtgtagagtttaaattcattaaattttt-aatatatacgtaacta 533
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 120 gtctagttaccagtagtgtagagtttaaattcattaaatttttaaatatatacgtaacta 179
Query: 534 atgaat-catatatgtgttcgtgattcgttt-aattaattacttt--gaaatttgaaatt 589
|||||| |||||||||||||||||||||||| ||| |||||| || ||||| ||||||
Sbjct: 180 atgaatacatatatgtgttcgtgattcgtttaaataaattacattagaaaattagaaatt 239
Query: 590 -gatg-atagtagtgtcagcaactgtttctattttaaagt-atctttagaagctggattt 646
|||| |||||||||||||||||||| |||| | || ||| |||| |||||||||||||
Sbjct: 240 agatgaatagtagtgtcagcaactgtatctaatctagagtaatctctagaagctggatta 299
Query: 647 tttaaagacact-gaaaaaggcag-aaacttact-agtgttccgtgagca-tatttg-tt 701
|| ||||||||| ||||||| ||| ||||||||| ||||| | ||||||| |||||| |
Sbjct: 300 ttaaaagacactggaaaaagccagaaaacttactaagtgtacggtgagcattatttgctc 359
Query: 702 gaacctggccgtactggatc 721
||||||| ||||||||||||
Sbjct: 360 gaacctgtccgtactggatc 379
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8579
Number of Sequences: 1807
Number of extensions: 8579
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 2
length of query: 903
length of database: 10,358,551
effective HSP length: 16
effective length of query: 887
effective length of database: 10,329,639
effective search space: 9162389793
effective search space used: 9162389793
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)