BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZC09FM1.SCF screened BAC_end
(944 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1541 1344 0.0
>3x_Contig1541
Length = 10565
Score = 1344 bits (678), Expect = 0.0
Identities = 776/799 (97%), Gaps = 8/799 (1%)
Strand = Plus / Minus
Query: 86 tttttttttttttcactgtccattctttgtcctttt-aaggattgtctgtccttcgagta 144
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1529 tttttttttttttcactgtccattctttgtccttttcaaggattgtctgtccttcgagta 1470
Query: 145 attcgacctcaatgagatcatgcgtcacgcatctctttgaatcctatatttttattatgt 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1469 attcgacctcaatgagatcatgcgtcacgcatctctttgaatcctatatttttattatgt 1410
Query: 205 ctctttcttttaaccaattgcaggatgttgaaattataggatatcatcttgacctgggtt 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1409 ctctttcttttaaccaattgcaggatgttgaaattataggatatcatcttgacctgggtt 1350
Query: 265 acagttctcataattcaagaacttcaagatgtgccacaaagcggcagacatgatggcacc 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1349 acagttctcataattcaagaacttcaagatgtgccacaaagcggcagacatgatggcacc 1290
Query: 325 aagacctggaccaatccagtaaatccaatggtagttagggaaagaggcagcagcgataca 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1289 aagacctggaccaatccagtaaatccaatggtagttagggaaagaggcagcagcgataca 1230
Query: 385 tggaccgaaagatctggctgggttcaaaccggcaccggtgtagtaaacacagatcaagtg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1229 tggaccgaaagatctggctgggttcaaaccggcaccggtgtagtaaacacagatcaagtg 1170
Query: 445 accaacaaacaatgcattaccaatggcgaatggagccattggggtagccttatgcttttc 504
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1169 accaacaaacaatgcaataccaatggcgaatggagccattggggtagccttatgcttttc 1110
Query: 505 aacggccatgaacaaaacggtggtacataggattgcggtaccgaaggcttccaagataac 564
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1109 aacggccatgaacaaaacggtggtacataggattgcggtaccgaaggcttccaagaaaac 1050
Query: 565 acctctggatctggaagcaccaccacctagaccgttagcgaataagatttcacctgnggt 624
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1049 acctctggatctggaagcaccaccacctagaccgttagcgaataagatttcacctggggt 990
Query: 625 catggcagatgcagcacctgcagcagccataccggcaacccatttgactgatccacatng 684
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 989 catggcagaagcagcacctgcagcagccataccggcaa-ccatttgactgatccacatga 931
Query: 685 acagagctcttggccatgggatgacgtttgtcaagacc-aagtcaaagtaacagct-ggt 742
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 930 caagagctcttggccatgggatgacgtttgtcaagaccaaagtcaaagtaacagctgggt 871
Query: 743 tcaaaataccaccagagactctgaagaagatgaaaacggc-aacatgacggagaaaccg- 800
||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 870 tcaaattaccaccagagactctgaagaagatgaaaacggcaaacatgacggagaaaccga 811
Query: 801 aatccaaagcgatcatgatcaattgacctggatgggaccctgnagaagaattcagaa-tg 859
|| |||||||||||||||||||||||||||||||||| |||| ||||| || ||||| ||
Sbjct: 810 aacccaaagcgatcatgatcaattgacctggatgggaacctggagaag-atacagaagtg 752
Query: 860 tcctcattatccatttggg 878
||||||||| | |||||||
Sbjct: 751 tcctcattagcgatttggg 733
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,840
Number of Sequences: 1807
Number of extensions: 12840
Number of successful extensions: 112
Number of sequences better than 1.0e-20: 1
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)