BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZC09RM1.SCF screened BAC_end
(958 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1771 1162 0.0
>3x_Contig1771
Length = 25932
Score = 1162 bits (586), Expect = 0.0
Identities = 737/776 (94%), Gaps = 9/776 (1%)
Strand = Plus / Plus
Query: 39 tcaaccttactgcgtttcttgggaggttcttctggtacgaatgaaggagatgtcgagaga 98
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8697 tcaagcttactgcgtttcttgggaggttcttctggtacgaatgaaggagatgtcgagaga 8756
Query: 99 gattctgatgagctttccctcttcttcttgaaatctgaaacagatgttgcgacaggtgta 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8757 gattctgatgagctttccctcttcttcttgaaatctgaaacagatgttgcgacaggtgta 8816
Query: 159 gataccggtgagtctctatttttgtttccactactgggcgactttttagctttggtactt 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8817 gataccggtgagtctctatttttgtttccactactgggcgactttttagctttggtactt 8876
Query: 219 ccgttactgttattattggaggtagaatcctctgattcgctttcatttcttcttctgccc 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8877 ccgttactgttattattggaggtagaatcctctgattcgctttcatttcttcttctgccc 8936
Query: 279 cgtcttttatccgtagatttagtgtcttccagttttaactcaatattggaaagtaatggg 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8937 cgtcttttatccgtagatttagtgtcttccagttttaactcaatattggaaagtaatggg 8996
Query: 339 tcctctcccatcttaacttcagcgatagtttccaaatcatccgctcttccctccgctgtc 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8997 tcctctcccatcttaacttcagcgatagtttccaaatcatccgctcttccctccgctgtc 9056
Query: 399 aacctgtcttcgacaaactcttgcaaactcgtatagtcggatgcaaactggtaagctntc 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 9057 aacctgtcttcgacaaactcttgcaaactcgtatagtcggatgcaaactggtaagctttc 9116
Query: 459 ttcaactctttcgaagaccttttgggcggcgattttatccacgcttctatattttcctca 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9117 ttcaactctttcgaagaccttttgggcggcgattttatccacgcttctatattttcctca 9176
Query: 519 gtaagaagttttaactgttttggtttagtcccataataggtagaatcgttaaaaaatg-c 577
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct: 9177 gtaagaagttttaactgttttggtttagtccaataataggtagaatcgttaaaaaatgcc 9236
Query: 578 acagcaacttgaccaacgttctnctttcggctttagcacactcttacttaatattcggtt 637
|||||||||||||||||||||| | |||| ||| |||||||||||||| |||| || |||
Sbjct: 9237 acagcaacttgaccaacgttctcc-ttcgccttcagcacactcttactcaata-tccgtt 9294
Query: 638 ga-gaacaactacagctggccatggtttgtaactgcccacggttgcaatg-atcagttca 695
|| |||||||||||||||||||||||| |||||||||||||| ||||| | | ||| |||
Sbjct: 9295 gaggaacaactacagctggccatggttcgtaactgcccacgg-tgcaaagaaccaggtca 9353
Query: 696 ccaattacttaaagcccggcggtcata-tttgcttaaatagattgggggatccggatggg 754
||| | ||| |||||||| | |||||| |||||||||||||||| | | || ||||| ||
Sbjct: 9354 ccagtaactaaaagcccgtctgtcatattttgcttaaatagatt-gtgtattcggattgg 9412
Query: 755 gaaaatcggtgagttttattggaaaggaatcttaaacccttaatgtaagggcgtaa 810
|||||| || || | || |||||||||| || ||||||| ||||| |||||||||
Sbjct: 9413 taaaatctgtaag-tataatggaaaggaaactaaaaccctaaatgtcagggcgtaa 9467
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7281
Number of Sequences: 1807
Number of extensions: 7281
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 958
length of database: 10,358,551
effective HSP length: 16
effective length of query: 942
effective length of database: 10,329,639
effective search space: 9730519938
effective search space used: 9730519938
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)