BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZC10FM1.SCF screened BAC_end
(939 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1685 1390 0.0
>3x_Contig1685
Length = 14400
Score = 1390 bits (701), Expect = 0.0
Identities = 824/852 (96%), Gaps = 10/852 (1%)
Strand = Plus / Minus
Query: 87 ttatttttgttttcaatattcaagttcaaaagcattgaataatcccactttttcatacac 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14016 ttatttttgttttcaatattcaagttcaaaagcattgaataatcccactttttcatacac 13957
Query: 147 atataagtgttgcagagatcattgaggtttgcttccaaaactttatttttcttgaatgtg 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13956 atataagtgttgcagagatcattgaggtttgcttccaaaactttatttttcttgaatgtg 13897
Query: 207 ttatgtttcatcttgttttgatgaagataactagagggtaaaattccagaattcttccag 266
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13896 ttatgtttcatcttgtcttgatgaagataactagagggtaaaattccagaattcttccag 13837
Query: 267 ttagaattgattcgttctttaggtatagcatcccatgcaattttaatgaatttaaatgca 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13836 ttagaattgattcgttctttaggtatagcatcccatgcaattttaatgaatttaaatgca 13777
Query: 327 tttgtcatagttaaacaactttgttcatatgtgagtagtttgaaatccgtaagactttgt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13776 tttgtcatagttaaacaactttgttcatatgtgagtagtttgaaatccgtaagactttgt 13717
Query: 387 gaaatatttttctggagatcaattaaggctttgtattgttgtaccctatatcttgcctta 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13716 gaaatatttttctggagatcaattaaggctttgtattgttgtaccctatatcttgcctta 13657
Query: 447 aattcttctaataccccccaattgaacggtaaaaatcttgaattagcagacgtgtaaatt 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13656 aattcttctaataccccccaattgaacggtaaaaatcttgaattagcagacgtgtaaatt 13597
Query: 507 agcaggatattttgaaggtttaaattgacaattctgtgagagcatgaatcatcaagtata 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13596 agcaggatattttgaaggtttaaattgacaattctgtgagagcatgaatcatcaagtata 13537
Query: 567 atccaaatttttctgttatctgagactaaccttttgtcaaatgccaccaaccaatcatgg 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13536 atccaaatttttctgttatctgagactaaccttttgtcaaatgccaccaaccaatcatgg 13477
Query: 627 aatacagtactagtcaaccaagattttctgttactttgatatacaatcccaaaccgctta 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13476 aatacagtactagtcaaccaagattttctgttactttgatatacaatcccaaaccgctta 13417
Query: 687 cctgttttctcacctagatggacatcattagtaccgatatggctatcttcccccatataa 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13416 cctgttttctcacctagatggacatcattagtaccgatatggctatcttcccccatataa 13357
Query: 747 tttttgaaagtgttgtaattttcggatcttacctattaccaa-gggttcatttttttcag 805
|||||||||||||||||||||||| ||| ||||||||||||| ||||||| ||||||||
Sbjct: 13356 tttttgaaagtgttgtaattttcgtatc-tacctattaccaaggggttca-gtttttcag 13299
Query: 806 tgccacttcattttgcccaaagcatgaccagcaattaccctctaattctttttntatact 865
||||||| | ||||| |||||||||| ||| ||||| |||||||| || | ||||||
Sbjct: 13298 tgccactcaagtttgcacaaagcatga-cagtaatta-cctctaatctcttctgtatact 13241
Query: 866 attaagtttcatactgggccataattctaaggaaggtttgtatgcaatataatgtttcat 925
||| |||||||||||| | |||||| |||||||| |||||||||| | |||||||||
Sbjct: 13240 att-agtttcatactgcg-cataatctaaaggaagg-ttgtatgcaaga-aatgtttca- 13186
Query: 926 tccaaggtaaat 937
||||||||||||
Sbjct: 13185 tccaaggtaaat 13174
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8099
Number of Sequences: 1807
Number of extensions: 8099
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)