BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZC10RM1.SCF screened BAC_end
(953 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1669 1300 0.0
>3x_Contig1669
Length = 15503
Score = 1300 bits (656), Expect = 0.0
Identities = 775/806 (96%), Gaps = 7/806 (0%)
Strand = Plus / Plus
Query: 44 cttgagcacctttttcgaaaacgctaacttcgtctgggttagattcttgcaatctaccct 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2250 cttgagcacctttttcgaaaacgctaacttcgtctgggttagattcttgcaatctaccct 2309
Query: 104 tgatttccttcatgtaacccttgatgtaagtcaagaaagatttcttgtcgaaagcagttt 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2310 tgatttccttcatgtaacccttgatgtaagtcaagaaagatttcttgtcgaaagcagttt 2369
Query: 164 gttgcaaacggaaagagtgaacaacattgttgaccaattcagtaccatcttcgacgtcgt 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2370 gttgcaaacggaaagagtgaacaacattgttgaccaattcagtaccatcttcgacgtcgt 2429
Query: 224 caccaccgtcttcagcagatgggttggcaccgatatcgatgttgtcaccaccaaccttga 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2430 caccaccgtcttcagcagatgggttggcaccgatatcgatgttgtcaccaccaaccttga 2489
Query: 284 ccatgtcacagtcagcttcgtaaatgacaccgtcaaccaacttcaagtcgtaggcatcgg 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2490 ccatgtcacagtcagcttcgtaaatgacaccgtcaaccaacttcaagtcgtaggcatcgg 2549
Query: 344 acaatagttcgtcaccagagataatatcagtgtaaatgatcatgttgctattgtatcagg 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2550 acaatagttcgtcaccagagataatatcagtgtaaatgatcatgttgctattgtatcagg 2609
Query: 404 gatcgattgatgttctcttcacgggatgtaagataaagctaaactaaactaaaactaaat 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2610 gatcgattgatgttctcttcacgggatgtaagataaagctaaactaaactaaaactaaat 2669
Query: 464 taaatcaactatccaaaaagattacaaaacaatcattacaaagaataaatattcaaagga 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2670 taaatcaactatccaaaaagattacaaaacaatcattacaaagaataaatattcaaagga 2729
Query: 524 aataaataacatcatgcactaaaatgtaatttaaaaccaagaagaaatacctctaaacaa 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2730 aataaataacatcatgcactaaaatgtaatttaaaaccaagaagaaatacctctaaacaa 2789
Query: 584 tgaaaagaattaatcttatcttgatatccaatgttcatcatgtgcatcgaatttccattc 643
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 2790 tgaaaagaattaattntatcttgatatccaatgttcatcatgtgcatcgaatttcca-tc 2848
Query: 644 ctttatat-aacctttctttgaatcagaaaacctttgacaaaaangaaaaaatatttttc 702
|||||||| |||||| ||||||| ||||||||| ||||||| |||||| |||||||
Sbjct: 2849 ctttatataaaccttcctttgaacaggaaaaccttgaacaaaaagaaaaaaaaatttttc 2908
Query: 703 actttcgctttttgtaaaagaaaaaatcacggcgatgagctgtattagtgggaaaaagca 762
|| ||||| || |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 2909 ac-ttcgc-ttctgtaaaagaaaaaatcacggcgatgagctgtagaagtgggaaaaagca 2966
Query: 763 attttccgttcaccacacattatattcaaccctcacgtgaatttggcttactggatggct 822
||| ||||| ||||||||| || |||||| | ||||||||| |||||| |||| || ||
Sbjct: 2967 attatccgtacaccacacaataaattcaagcatcacgtgaa-ttggctaactgcat-gca 3024
Query: 823 tttcccttttatttaggctcgtaaac 848
|||||| ||||| |||||||||||||
Sbjct: 3025 tttccc-tttatataggctcgtaaac 3049
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9064
Number of Sequences: 1807
Number of extensions: 9064
Number of successful extensions: 81
Number of sequences better than 1.0e-20: 1
length of query: 953
length of database: 10,358,551
effective HSP length: 16
effective length of query: 937
effective length of database: 10,329,639
effective search space: 9678871743
effective search space used: 9678871743
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)