BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZC11RM1.SCF screened BAC_end
(941 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1428 1318 0.0
3x_Contig1557 161 3e-39
3x_Contig1518 153 8e-37
3x_Contig1663 151 3e-36
3x_Contig1374 151 3e-36
3x_Contig1446 149 1e-35
3x_Contig1521 145 2e-34
3x_Contig1741 113 7e-25
3x_Contig1272 111 3e-24
>3x_Contig1428
Length = 9146
Score = 1318 bits (665), Expect = 0.0
Identities = 771/795 (96%), Gaps = 11/795 (1%)
Strand = Plus / Plus
Query: 44 gctttcatttccgcaatttatccatcttttgcaacgcttaaataataatattgtatcgca 103
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 5958 gctttcatttccgcaatttatccac--tttgcaacgcttaaataataatattgtatcgca 6015
Query: 104 tgagaaagagtgtattttaacacaggtatggctattagacggaacagagaaggaagtatc 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6016 tgagaaagagtgtattttaacacaggtatggctattagacggaacagagaaggaagtatc 6075
Query: 164 aacagccgtacataggttagattccttagtgttggcgtaaaaacaccacttactcatgtg 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6076 aacagccgtacataggttagattccttagtgttggcgtaaaaacaccacttactcatgtg 6135
Query: 224 agctaaccagatccggcaatgttaaataagtcatgtcgtccaaaattttataactgtgta 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6136 agctaaccagatccggcaatgttaaataagtcatgtcgtccaaaattttataactgtgta 6195
Query: 284 ttaatcgttagtcaattggactttaaagcactaaggaaataaaaaaaaaaacattttacg 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6196 ttaatcgttagtcaattggactttaaagcactaaggaaataaaaaaaaaaacattttacg 6255
Query: 344 ttggtatgctgttgtcacaggtaggggttggagctttgtgaatttgaggagacggtcttt 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6256 ttggtatgctgttgtcacaggtaggggttggagctttgtgaatttgaggagacggtcttt 6315
Query: 404 ccggtcgaaacaagtttatcacacggtcgttcatctactaagtagataggcttcaaataa 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6316 ccggtcgaaacaagtttatcacacggtcgttcatctactaagtagataggcttcaaataa 6375
Query: 464 aaagatactccgatacggggagtcgaaccccggtctccacggtgaaagcgtgatgtgata 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6376 aaagatactccgatacggggagtcgaaccccggtctccacggtgaaagcgtgatgtgata 6435
Query: 524 gccgttacactatatcggataataattgatatactgagcaagtcacataactcgtataag 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6436 gccgttacactatatcggataataattgatatactgagcaagtcacataactcgtataag 6495
Query: 584 ttcggagaatgctgtcacaggcccatttccggtgtcatggtttatttgtacatatggcaa 643
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct: 6496 ttcggagaatgctgtcacaggccca-ttccggtgtcatggttaatttgtacatatggcaa 6554
Query: 644 tccagctttgatagggaa-cttaattactcatattgttccataggtatttgacaatgtat 702
|||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||
Sbjct: 6555 tccagctttgatagggaacctcaattactcatatggttccataggtatttgacaatgtat 6614
Query: 703 tttcgtaaggggtttgccctttcctgttgaggaaaatgtcccttagatctaaagccgtga 762
||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct: 6615 tttcgtaaggggtatgccctttcctgttgaggaaaatgtccctcagatctaaag-cgtga 6673
Query: 763 ttc-aaagcgggaatcggatttttc-actgacttaagaatcttc--aaatagtttaccct 818
|| |||||| |||||| | || || ||||||| ||| |||||| |||||||||| |||
Sbjct: 6674 atcgaaagcgtgaatcgtaattatcaactgactaaag-atcttcctaaatagttta-cct 6731
Query: 819 tgggggacattacat 833
|||||||| ||||||
Sbjct: 6732 tgggggacgttacat 6746
>3x_Contig1557
Length = 10562
Score = 161 bits (81), Expect = 3e-39
Identities = 84/85 (98%)
Strand = Plus / Minus
Query: 462 aaaaagatactccgatacggggagtcgaaccccggtctccacggtgaaagcgtgatgtga 521
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2622 aaaaaaatactccgatacggggagtcgaaccccggtctccacggtgaaagcgtgatgtga 2563
Query: 522 tagccgttacactatatcggataat 546
|||||||||||||||||||||||||
Sbjct: 2562 tagccgttacactatatcggataat 2538
>3x_Contig1518
Length = 11021
Score = 153 bits (77), Expect = 8e-37
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 468 atactccgatacggggagtcgaaccccggtctccacggtgaaagcgtgatgtgatagccg 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5743 atactccgatacggggagtcgaaccccggtctccacggtgaaagcgtgatgtgatagccg 5802
Query: 528 ttacactatatcggata 544
|||||||||||||||||
Sbjct: 5803 ttacactatatcggata 5819
>3x_Contig1663
Length = 13533
Score = 151 bits (76), Expect = 3e-36
Identities = 76/76 (100%)
Strand = Plus / Minus
Query: 468 atactccgatacggggagtcgaaccccggtctccacggtgaaagcgtgatgtgatagccg 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 931 atactccgatacggggagtcgaaccccggtctccacggtgaaagcgtgatgtgatagccg 872
Query: 528 ttacactatatcggat 543
||||||||||||||||
Sbjct: 871 ttacactatatcggat 856
>3x_Contig1374
Length = 8985
Score = 151 bits (76), Expect = 3e-36
Identities = 86/88 (97%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 458 aaataaaaagata-ctccgatacggggagtcgaaccccggtctccacggtgaaagcgtga 516
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8805 aaataaaaagaaaactccgatacggggagtcgaaccccggtctccacggtgaaagcgtga 8864
Query: 517 tgtgatagccgttacactatatcggata 544
||||||||||||||||||||||||||||
Sbjct: 8865 tgtgatagccgttacactatatcggata 8892
>3x_Contig1446
Length = 10598
Score = 149 bits (75), Expect = 1e-35
Identities = 75/75 (100%)
Strand = Plus / Plus
Query: 470 actccgatacggggagtcgaaccccggtctccacggtgaaagcgtgatgtgatagccgtt 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3232 actccgatacggggagtcgaaccccggtctccacggtgaaagcgtgatgtgatagccgtt 3291
Query: 530 acactatatcggata 544
|||||||||||||||
Sbjct: 3292 acactatatcggata 3306
>3x_Contig1521
Length = 8057
Score = 145 bits (73), Expect = 2e-34
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 470 actccgatacggggagtcgaaccccggtctccacggtgaaagcgtgatgtgatagccgtt 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4224 actccgatacggggagtcgaaccccggtctccacggtgaaagcgtgatgtgatagccgtt 4283
Query: 530 acactatatcgga 542
|||||||||||||
Sbjct: 4284 acactatatcgga 4296
>3x_Contig1741
Length = 21706
Score = 113 bits (57), Expect = 7e-25
Identities = 69/73 (94%)
Strand = Plus / Plus
Query: 471 ctccgatacggggagtcgaaccccggtctccacggtgaaagcgtgatgtgatagccgtta 530
||||||||| ||||||||||||| |||||||||||||| |||||| ||||||||||||||
Sbjct: 9273 ctccgataccgggagtcgaacccgggtctccacggtgagagcgtggtgtgatagccgtta 9332
Query: 531 cactatatcggat 543
|||||||||||||
Sbjct: 9333 cactatatcggat 9345
>3x_Contig1272
Length = 8315
Score = 111 bits (56), Expect = 3e-24
Identities = 68/72 (94%)
Strand = Plus / Plus
Query: 471 ctccgatacggggagtcgaaccccggtctccacggtgaaagcgtgatgtgatagccgtta 530
||||||||| ||||||||||||| |||||||||||||| |||||| ||||||||||||||
Sbjct: 5144 ctccgataccgggagtcgaacccgggtctccacggtgagagcgtggtgtgatagccgtta 5203
Query: 531 cactatatcgga 542
||||||||||||
Sbjct: 5204 cactatatcgga 5215
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,699
Number of Sequences: 1807
Number of extensions: 11699
Number of successful extensions: 128
Number of sequences better than 1.0e-20: 9
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)