BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZC12RM1.SCF screened BAC_end
(949 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1468 1168 0.0
>3x_Contig1468
Length = 9852
Score = 1168 bits (589), Expect = 0.0
Identities = 734/774 (94%), Gaps = 10/774 (1%)
Strand = Plus / Minus
Query: 43 cttgatgttgaagttgtattggttccaaatattggtttagaggcattgacactcggagtt 102
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1614 cttgatgttgaagttgtattggcaccaaatattggtttagaggcattgacactcggagtt 1555
Query: 103 gtagtcattgcattatttccagatagtccgaaattaaaagcgggctttgcatcggtcttt 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1554 gtagtcattgcattatttccagatagtccgaaattaaaagcgggctttgcatcggtcttt 1495
Query: 163 tgttcaggttgtgtaccaaatgagaatccactcttgggttgagtgtctttagcctgttgc 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1494 tgttcaggttgtgtaccaaatgagaatccactcttgggttgagtgtctttagcctgttgc 1435
Query: 223 gacccgccaaatagcgaagagctacttcctgctgctcctacggagccaaagccaccaaat 282
|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 1434 gacccgccaaatagcgaagagctacttcctgc--cttctacggagccaaagccaccaaat 1377
Query: 283 gttggttttgctgcgcttgtattcgtggtgttgctgttgttattgttcgcattgctggca 342
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1376 gttggttttg--gcgcttgtattcgtggtgttgctgttgttattgttcgcattgctggca 1319
Query: 343 gcatcgtttgcgttaaaacctccaaaagcaggttttggtgcatcgcctgtaccagcagtt 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1318 gcatcgtttgcgttaaaacctccaaaagcaggttttggtgcatcgcctgtaccagcagtt 1259
Query: 403 gtattatatgcaccaaacgaaaatggcgaagctgctggcttgactgcattatcgccctgt 462
|||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1258 gtattagaggcaccaaacgaaaatggcgaagctgctggcttgactgcattagcgccctgt 1199
Query: 463 tgtgtattcataccaaagcctccgaatgcaggttttgtttgtccattgtcattggtagtg 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1198 tgtgtattcataccaaagcctccgaatgcaggttttgtttgtccattgtcattggtagtg 1139
Query: 523 gtcgctccaaacgctgaaaatgcattttcctgctgcgtattagagctaccagcagctgaa 582
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1138 gtcgctccaaacgctgaaaatgcatttccctgctgcgtattagagctaccagcagctgaa 1079
Query: 583 ccgaaac-tgcaaaagcattgtcactggtctggccttcagtattgccaaagatagagg-a 640
||||||| ||||||||||||| |||||||||||||| ||||||||||||||| ||||| |
Sbjct: 1078 ccgaaacttgcaaaagcattgccactggtctggcctccagtattgccaaagagagaggaa 1019
Query: 641 gcacctgtgctggtactggtgttttctgttggagatacattttgtcctgattcaattccg 700
|||||||||||||||||||||||| |||| | ||||||||||||||||||| || | |||
Sbjct: 1018 gcacctgtgctggtactggtgtttcctgtggtagatacattttgtcctgatccagtaccg 959
Query: 701 ggcaacaaattggaattgctggttccaccggaagcttttc--cggtgttaaaaaattaaa 758
| |||||||||||||||||| | ||||||||||| |||| || ||| |||| || ||
Sbjct: 958 gcaaacaaattggaattgctgttcccaccggaagcatttccgcgctgtagaaaagttgaa 899
Query: 759 aggggggtttggaattgaaactaattttgttgatttaccaaacccttgtaattg 812
|| ||||||| ||||||||||| |||||||||| ||| | ||||||||||||||
Sbjct: 898 agtggggttt-gaattgaaactcattttgttga-ttaacgaacccttgtaattg 847
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7623
Number of Sequences: 1807
Number of extensions: 7623
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 949
length of database: 10,358,551
effective HSP length: 16
effective length of query: 933
effective length of database: 10,329,639
effective search space: 9637553187
effective search space used: 9637553187
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)