BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZD01RM1.SCF screened BAC_end
(944 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1166 1207 0.0
>3x_Contig1166
Length = 5040
Score = 1207 bits (609), Expect = 0.0
Identities = 700/720 (97%), Gaps = 8/720 (1%)
Strand = Plus / Minus
Query: 41 atcaggtttgggtggaaaaacatactagtcaattggaaagaatatacaaaaagaaagttt 100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1813 atcaggtttgggtggaaaaacatactagtcaattggaaagaatatacaaaaagaaagttt 1754
Query: 101 tacagttaagctctgattgcataaaaattgatgagaacattgatacctttgctgttgtaa 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1753 tacagttaagctctgattgcataaaaattgatgagaacattgatacctttgctgttgtaa 1694
Query: 161 aacataaactaccgaaaagtgtcaaactttcccccgaaaaaaaccctaacaaacgattga 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1693 aacataaactaccgaaaagtgtcaaactttcccccgaaaaaaaccctaacaaacgattga 1634
Query: 221 aacttttttcaaacaatatttaatgtgacgctgctattaaaaagttggtcagctttgaat 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1633 aacttttttcaaacaatatttaatgtgacgctgctattaaaaagttggtcagctttgaat 1574
Query: 281 ctgtttgtttatatatacataaagtgccattggtgaagatactctctttgttacacgctc 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1573 ctgtttgtttatatatacataaagtgccattggtgaagatactctctttgttacacgctc 1514
Query: 341 ttttcgtgtcatagtgttttgtttcttgatttatccgtccaatattttctatgctcatcg 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1513 ttttcgtgtcatagtgttttgtttcttgatttatccgtccaatattttctatgctcatcg 1454
Query: 401 ctttcatttttttttgtttttctctcatatatcaaatacagttggcaatacaaaaaaaat 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1453 ctttcatttttttttgtttttctctcatatatcaaatacagttggcaatacaaaaaaaat 1394
Query: 461 taacttaagacgacatccaaagaattaaggcactttccagttatgctttttgtattgcac 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1393 taacttaagacgacatccaaagaattaaggcactttccagttatgctttttgtattgcac 1334
Query: 521 tgagccgctctttgtttcttttcactgccatcttcactaacattcgacttattttttaca 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1333 tgagccgctctttgtttcttttcactgccatcttcactaacattcgacttattttttaca 1274
Query: 581 caattgtaagcccctca-ccagcaaaacattactgntttacaaatttgttgtgtgaagtt 639
|||||||||| |||||| ||||||||||||||||| || |||||||||||||||| |||
Sbjct: 1273 caattgtaag-ccctcagccagcaaaacattactgtttaccaaatttgttgtgtgaggtt 1215
Query: 640 tgtgcatttgcgtcatgattaa-gttaaatcaataaacagtgccattctct-aacaaaaa 697
|||||||||||||||||| ||| || |||||||||| |||||| | ||||| ||||||||
Sbjct: 1214 tgtgcatttgcgtcatgaataaggtaaaatcaataagcagtgcga-tctctaaacaaaaa 1156
Query: 698 gttgcttttttcttaatacgatcaatcatatcttttctttgtttagaggaaaccttggat 757
||||| || ||||| ||||||||||||||||| | |||||||| ||| ||||||||||||
Sbjct: 1155 gttgc-ttcttcttcatacgatcaatcatatc-tctctttgttaaga-gaaaccttggat 1099
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,291
Number of Sequences: 1807
Number of extensions: 10291
Number of successful extensions: 125
Number of sequences better than 1.0e-20: 1
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)