BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZD02FM1.SCF screened BAC_end
(907 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig410 1493 0.0
>3x_Contig410
Length = 1641
Score = 1493 bits (753), Expect = 0.0
Identities = 808/821 (98%), Gaps = 4/821 (0%)
Strand = Plus / Minus
Query: 86 tgatcagggtacggcacagtttaggattcacaggagattcattgaaccgattcaaacaat 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886 tgatcagggtacggcacagtttaggattcacaggagattcattgaaccgattcaaacaat 827
Query: 146 cctgatagatcgccattttgtctggcaaggacccactgtgtgggtcctcagacttcttat 205
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 826 cctgatagatcgccattttgtctggcaaggacccactgtgtgggtc-tcagacttcttat 768
Query: 206 aagtttgtgcatacatgcaattggcagtgctaggataccttcaaatgacgtactaacctt 265
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 aagtttgtgcagacatgcaattggcagtgctaggataccttcaaatgacgtactaacctt 708
Query: 266 tagtagccaattttgagcctattaacctcgtgttttatccaattctttttgccgtgtggt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 tagtagccaattttgagcctattaacctcgtgttttatccaattctttttgccgtgtggt 648
Query: 326 atggtatatatttatattcataatgttttcagtttgcaaatcggtagaagtcctttggaa 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 atggtatatatttatattcataatgttttcagtttgcaaatcggtagaagtcctttggaa 588
Query: 386 tgaaaaaaaaagtgaagcgggtgtgtgaaagtgagggtaacacttgttttttaattatga 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 tgaaaaaaaaagtgaagcgggtgtgtgaaagtgagggtaacacttgttttttaattatga 528
Query: 446 tatatatgtatatatatatatatatatggatatggagatatatatgatatagcaggcaag 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 tatatatgtatatatatatatatatatggatatggagatatatatgatatagcaggcaag 468
Query: 506 atcactgctgctgttcatctagagtcaggagtagttgtgcaagacatctcttggtaccta 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 atcactgctgctgttcatctagagtcaggagtagttgtgcaagacatctcttggtaccta 408
Query: 566 catcgtcctgtagtgcttcattgaaggtgttatctcttagttgttgcggcaaaacttgtt 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 catcgtcctgtagtgcttcattgaaggtgttatctcttagttgttgcggcaaaacttgtt 348
Query: 626 tcaacaatcttctggcttctaaattatccgataatcttaggtagcatcttacaacatgtt 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 tcaacaatcttctggcttctaaattatccgataatcttaggtagcatcttacaacatgtt 288
Query: 686 tcaataatcttcccggcacctgttgttgggacatgtgcttaaacatagttgccaaaactt 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 tcaataatcttcccggcacctgttgttgggacatgtgcttaaacatagttgccaaaactt 228
Query: 746 gtgacaccgcgtataaccgttctggggtcgcgcatacgaactggagtccgttatcgtcta 805
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 gtgacaccgcgtagaaccgttctggggtcgcgcatacgaactggagtccgttatcgtcta 168
Query: 806 atattattttctgtaagatgaagataccgacgatctttcgaaagttc-gaaaaagtttcc 864
||| |||||||||||||||||||||| |||||||| ||||||||||| ||| | |||||
Sbjct: 167 ataatattttctgtaagatgaagatagcgacgatc-ttcgaaagttctgaagagttttcc 109
Query: 865 atgattctt-aacattatgggattatatctgtccttagaag 904
||||||||| ||||| ||||||| |||||||||||||||||
Sbjct: 108 atgattcttaaacataatgggataatatctgtccttagaag 68
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,420
Number of Sequences: 1807
Number of extensions: 12420
Number of successful extensions: 2260
Number of sequences better than 1.0e-20: 1
length of query: 907
length of database: 10,358,551
effective HSP length: 16
effective length of query: 891
effective length of database: 10,329,639
effective search space: 9203708349
effective search space used: 9203708349
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)