BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZD02RM1.SCF screened BAC_end
(824 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1744 696 0.0
>3x_Contig1744
Length = 24119
Score = 696 bits (351), Expect = 0.0
Identities = 382/391 (97%), Gaps = 1/391 (0%)
Strand = Plus / Plus
Query: 43 gcttgtaccaaacctattgtggttgtcgatttaccttcacccaaaggagttggagtaata 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15916 gcttgtaccaaacctattgtggttgtcgatttaccttcacccaaaggagttggagtaata 15975
Query: 103 ccggcaacaagaacgtacttaccgttctcgttatctgccaatctattcgcaattttggga 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15976 ccggcaacaagaacgtacttaccgttctcgttatctgccaatctattcgcaattttggga 16035
Query: 163 gaaactttcgccttataatgaccatatagttctagttcacttggatgtacaccaagttca 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16036 gaaactttcgccttataatgaccatatagttctagttcacttggatgtacaccaagttca 16095
Query: 223 ttggcaactgcttcaatgtatttcggcttttgctttcttgagatttcaatgtcagatggc 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16096 ttggcaactgcttcaatgtatttcggcttttgctttcttgagatttcaatgtcagatggc 16155
Query: 283 acttttgcttcaatcttgagaggcaatggtttaatatgtggcattctagtggattcctct 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16156 acttttgcttcaatcttgagaggcaatggtttaatatgtggcattctagtggattcctct 16215
Query: 343 ctttgcctcttggcagccaaaagaacgttttgaaccaacattcgaacctgtatttggacc 402
|||||||||||||||||||||||||||||||||||||||| ||| | |||| |||||||
Sbjct: 16216 ctttgcctcttggcagccaaaagaacgttttgaaccaaca-tcgcaactgtcattggacc 16274
Query: 403 acctccacctggttcaggggtaatggaagaa 433
| ||||||||||| |||| |||||| |||||
Sbjct: 16275 aactccacctggtacaggtgtaatgtaagaa 16305
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,689
Number of Sequences: 1807
Number of extensions: 16689
Number of successful extensions: 447
Number of sequences better than 1.0e-20: 1
length of query: 824
length of database: 10,358,551
effective HSP length: 16
effective length of query: 808
effective length of database: 10,329,639
effective search space: 8346348312
effective search space used: 8346348312
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)