BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZD03FM1.SCF screened BAC_end
(959 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1663 1346 0.0
3x_Contig555 377 e-104
>3x_Contig1663
Length = 13533
Score = 1346 bits (679), Expect = 0.0
Identities = 764/782 (97%), Gaps = 8/782 (1%)
Strand = Plus / Plus
Query: 87 tgaacgaactcacacgtgactgggaagatatcaaatctcagttaccctgatattacccta 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11869 tgaacgaactcacacgtgactgggaagatatcaaatctcagttaccctgatattacccta 11928
Query: 147 tttcttttctaccctaaataggattgtgaccctgcagaagagcagacaacagtaaaataa 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11929 tttcttttctaccctaaataggattgtgaccctgcagaagagcagacaacagtaaaataa 11988
Query: 207 tacattggatacgtaatcaaaccgattcgatatgaagtgctatcaccatgtgtttctcaa 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11989 tacattggatacgtaatcaaaccgattcgatatgaagtgctatcaccatgtgtttctcaa 12048
Query: 267 gtactggttatagggaggccagttgcaacagaagtattctatgctgactgattcttcact 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12049 gtactggttatagggaggccagttgcaacagaagtattctatgctgactgattcttcact 12108
Query: 327 ttctgtttcttatatttctcttttagtaaattgatggaaaatgcaagaaatcgaaaaaaa 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12109 ttctgtttcttatatttctcttttagtaaattgatggaaaatgcaagaaatcgaaaaaaa 12168
Query: 387 aaaaaaattaaaacaatgaaattgaatacttgattcagtttagttatgtatcatcatctc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12169 aaaaaaattaaaacaatgaaattgaatacttgattcagtttagttatgtatcatcatctc 12228
Query: 447 ttgcgcttacgatttgagacactttcgaatagatactgctatttattatactccgttgtt 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12229 ttgcgcttacgatttgagacactttcgaatagatactgctatttattatactccgttgtt 12288
Query: 507 gcaactttactgtagtcactgcacacacataccctgatacagttataaaataaaaatgtc 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12289 gcaactttactgtagtcactgcacacacataccctgatacagttataaaataaaaatgtc 12348
Query: 567 tgctgaagttcctactttcaagctagttctagtcggtgatggtggtaccggtaagacaac 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12349 tgctgaagttcctactttcaagctagttctagtcggtgatggtggtaccggtaagacaac 12408
Query: 627 tntcgtcaagagacatttgactggtgaattcgagaag-agtacattgctaccatcggtgt 685
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 12409 tttcgtcaagagacatttgactggtgaattcgagaagaagtacattgctaccatcggtgt 12468
Query: 686 tgaagtgcatcctttggcttttta-accaacttt-gtgaaatcaaattcgatgtctggga 743
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 12469 tgaagtgcatcctttggctttttacaccaactttggtgaaatcaaattcgatgtctggga 12528
Query: 744 taccgccagtcaggaaaaattcggtgggtctaagaagatggttattatatcaaatgctca 803
|||||| |||| |||||||||||| |||||||| |||||||||||||||| ||||||||
Sbjct: 12529 taccgcaggtcaagaaaaattcggt-ggtctaag-agatggttattatatc-aatgctca 12585
Query: 804 atgtgggtattcatatggttggaagtgacttccagaattacctacaagaacgttccaaac 863
|||| |||| |||| ||| || |||||||||||||| |||||||||||||||||||||
Sbjct: 12586 atgt-ggta-tcattatgtttgatgtgacttccagaatcacctacaagaacgttccaaac 12643
Query: 864 tg 865
||
Sbjct: 12644 tg 12645
>3x_Contig555
Length = 1912
Score = 377 bits (190), Expect = e-104
Identities = 275/293 (93%), Gaps = 8/293 (2%)
Strand = Plus / Minus
Query: 576 tcctactttcaagctagttctagtcggtgatggtggtaccggtaagacaactntcgtcaa 635
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1908 tcctactttcaagctagttctagtcggtgatggtggtaccggtaagacaactttcgtcaa 1849
Query: 636 gagacatttgactggtgaattcgagaag-agtacattgctaccatcggtgttgaagtgca 694
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1848 gagacatttgactggtgaattcgagaagaagtacattgctaccatcggtgttgaagtgca 1789
Query: 695 tcctttggcttttta-accaacttt-gtgaaatcaaattcgatgtctgggataccgccag 752
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |
Sbjct: 1788 tcctttggctttttacaccaactttggtgaaatcaaattcgatgtctgggataccgcagg 1729
Query: 753 tcaggaaaaattcggtgggtctaagaagatggttattatatcaaatgctcaatgtgggta 812
||| |||||||||||| |||||||| |||||||||||||||| |||||||||||| ||||
Sbjct: 1728 tcaagaaaaattcggt-ggtctaag-agatggttattatatc-aatgctcaatgt-ggta 1673
Query: 813 ttcatatggttggaagtgacttccagaattacctacaagaacgttccaaactg 865
|||| ||| || |||||||||||||| |||||||||||||||||||||||
Sbjct: 1672 -tcattatgtttgatgtgacttccagaatcacctacaagaacgttccaaactg 1621
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,230
Number of Sequences: 1807
Number of extensions: 16230
Number of successful extensions: 450
Number of sequences better than 1.0e-20: 2
length of query: 959
length of database: 10,358,551
effective HSP length: 16
effective length of query: 943
effective length of database: 10,329,639
effective search space: 9740849577
effective search space used: 9740849577
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)