BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZD03RM1.SCF screened BAC_end
(965 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1493 1158 0.0
3x_Contig1571 135 2e-31
>3x_Contig1493
Length = 12243
Score = 1158 bits (584), Expect = 0.0
Identities = 681/704 (96%), Gaps = 7/704 (0%)
Strand = Plus / Plus
Query: 49 ccactgaatacgaaaccgtcactttgactttgtctaagaacggtcactggttcaccaaga 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10902 ccactgaatacgaaaccgtcactttgactttgtctaagaacggtcactggttcaccaaga 10961
Query: 109 ccgtcacccaagcagtcggtttcgtctggactggtgaagctaccacctacactggtgttg 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10962 ccgtcacccaagcagtcggtttcgtctggactggtgaagctaccacctacactggtgttg 11021
Query: 169 ctccatgggctacttcttctgctgctgacgaagaaatcacctcttctggcttcagcaaca 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11022 ctccatgggctacttcttctgctgctgacgaagaaatcacctcttctggcttcagcaaca 11081
Query: 229 gtactgaagtcactgaaactgtcactgacaagactaaaaccaccgctactatcacttcct 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11082 gtactgaagtcactgaaactgtcactgacaagactaaaaccaccgctactatcacttcct 11141
Query: 289 gtgaagatgacatctgtcagaagaccaccgaagaagaagcttcttcatctaccgttatca 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11142 gtgaagatgacatctgtcagaagaccaccgaagaagaagcttcttcatctaccgttatca 11201
Query: 349 ccaccgtcatcgaaggtgttaccgttgtaaccaccgtcccatgcaccaccacttctaccg 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11202 ccaccgtcatcgaaggtgttaccgttgtaaccaccgtcccatgcaccaccacttctaccg 11261
Query: 409 tcgaatgtaccgaataacaatgccaaaagacttctaccaacgctccagttaacccaacca 468
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11262 tcgaatgtaccgaagaacaatgccaaaagacttctaccaacgctccagttaacccaacca 11321
Query: 469 ctgtagttccaactactgaagctccaggtaagacctcttccagtattgtcactgttttct 528
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 11322 ctgtagttccaactactgaagctccaggtaagacctcttccggtattgtcactg-tttct 11380
Query: 529 tcttcttccgctgaaactgctc-accatccgttactgtctccacctacactggtgctgct 587
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 11381 tcttcttccgctgaaactgctcaaccatccgttactgtctccacctacactggtgctgct 11440
Query: 588 gctatggcttctgtcggtcccggtttgttcgctgctgccgttcgagctatgttggtatta 647
|||||||||||||||||| |||||||||||||||||||||| | ||||||||| ||| |
Sbjct: 11441 gctatggcttctgtcggtaccggtttgttcgctgctgccgtcggtgctatgttgttataa 11500
Query: 648 ttttcttagcttgatgctg-agaaaatcc-cccaatattattatgattc-ttttttgtca 704
||||||||||||||||||| ||||||||| | |||||||||||||||| |||||| |||
Sbjct: 11501 ttttcttagcttgatgctgtagaaaatccacaaaatattattatgattctttttttttca 11560
Query: 705 ac-acacctct-tttttaaaccttaatggcccattattaaactt 746
|| |||| ||| |||| |||| |||||| || ||||||||||||
Sbjct: 11561 acaacacttctcttttaaaactttaatgtcctattattaaactt 11604
Score = 135 bits (68), Expect = 2e-31
Identities = 83/88 (94%)
Strand = Plus / Plus
Query: 60 gaaaccgtcactttgactttgtctaagaacggtcactggttcaccaagaccgtcacccaa 119
|||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 7530 gaaaccatcaccttgactttgtctaagaacggtcactggttcaccaagactgtcacccaa 7589
Query: 120 gcagtcggtttcgtctggactggtgaag 147
|||||||||| ||||||||| |||||||
Sbjct: 7590 gcagtcggttacgtctggaccggtgaag 7617
>3x_Contig1571
Length = 13536
Score = 135 bits (68), Expect = 2e-31
Identities = 116/132 (87%)
Strand = Plus / Plus
Query: 49 ccactgaatacgaaaccgtcactttgactttgtctaagaacggtcactggttcaccaaga 108
|||||||||||||||| ||| | |||||||| |||||||||||||||||||| ||||
Sbjct: 12204 ccactgaatacgaaactaagactctaactttgtccaagaacggtcactggttcactaaga 12263
Query: 109 ccgtcacccaagcagtcggtttcgtctggactggtgaagctaccacctacactggtgttg 168
| |||||||| | || |||||||||||||| |||||||| || ||||||||||||||||
Sbjct: 12264 ctgtcacccagccggttggtttcgtctggaccggtgaagcaactacctacactggtgttg 12323
Query: 169 ctccatgggcta 180
||||||||||||
Sbjct: 12324 ctccatgggcta 12335
Score = 135 bits (68), Expect = 2e-31
Identities = 116/132 (87%)
Strand = Plus / Plus
Query: 49 ccactgaatacgaaaccgtcactttgactttgtctaagaacggtcactggttcaccaaga 108
|||||||||||||||| ||| | |||||||| |||||||||||||||||||| ||||
Sbjct: 12531 ccactgaatacgaaactaagactctaactttgtccaagaacggtcactggttcactaaga 12590
Query: 109 ccgtcacccaagcagtcggtttcgtctggactggtgaagctaccacctacactggtgttg 168
| |||||||| | || |||||||||||||| |||||||| || ||||||||||||||||
Sbjct: 12591 ctgtcacccagccggttggtttcgtctggaccggtgaagcaactacctacactggtgttg 12650
Query: 169 ctccatgggcta 180
||||||||||||
Sbjct: 12651 ctccatgggcta 12662
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,987
Number of Sequences: 1807
Number of extensions: 16987
Number of successful extensions: 411
Number of sequences better than 1.0e-20: 2
length of query: 965
length of database: 10,358,551
effective HSP length: 16
effective length of query: 949
effective length of database: 10,329,639
effective search space: 9802827411
effective search space used: 9802827411
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)