BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZD04RM1.SCF screened BAC_end
(904 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig774 884 0.0
>3x_Contig774
Length = 2612
Score = 884 bits (446), Expect = 0.0
Identities = 521/538 (96%), Gaps = 6/538 (1%)
Strand = Plus / Minus
Query: 51 cattccctcaagaaggttcaatgcatccgggttggcatttgggtataaagtgctgaatgg 110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2023 cattccctcaagaaggttcaatgcatccgggttggcatttgggtataaagtgctgaatgg 1964
Query: 111 tatctttggaatatatcctagctggtggatatagtcttggacgtttttcgatccgattct 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1963 tatctttggaatatatcctagctggtggatatagtcttggacgtttttcgatccgattct 1904
Query: 171 tttcaaagtttcctctggaggagtccccaagacttgtaagatcctattcaattggtcgac 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1903 tttcaaagtttcctctggaggagtccccaagacttgtaagatcctattcaattggtcgac 1844
Query: 231 gtaatctttacccttaaagataggtttcccacctagcaattccgccaagatacaaccaca 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1843 gtaatctttacccttaaagataggtttcccacctagcaattccgccaagatacaaccaca 1784
Query: 291 agaccatacgtcaatagcctttgtataaccttgatagctcaacataatttccggtgctct 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1783 agaccatacgtcaatagcctttgtataaccttgatagctcaacataatttccggtgctct 1724
Query: 351 gtaccatctcgttgccacgtattcggtcaaaaattggttattttctactggattctcgct 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1723 gtaccatctcgttgccacgtattcggtcaaaaattggttattttctactggattctcgct 1664
Query: 411 gtaccctcttgccaatccgaaatcacaaatcttcaactgacaatcagcgttaaccaaaag 470
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1663 gtaccctctggccaatccgaaatcacaaatcttcaactgacaatcagcgttaaccaaaag 1604
Query: 471 attccttgctttcaatt-acgatggagcacgtctgctgaatgaat-tatttttacccaca 528
||||| || ||||| | ||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 1603 attccctggcttcaaatcacgatggagcacgtctgctgaatgaatatattttaacccaca 1544
Query: 529 a-gaatttg-tagaatgacgattggtaa-gggcatttgttaagg-ctgacccgatttt 582
| |||| || |||| ||||||||||| |||||| |||||||| |||||||||||||
Sbjct: 1543 aagaatctggtagatgaacgattggtaatgggcatctgttaagggctgacccgatttt 1486
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7168
Number of Sequences: 1807
Number of extensions: 7168
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 904
length of database: 10,358,551
effective HSP length: 16
effective length of query: 888
effective length of database: 10,329,639
effective search space: 9172719432
effective search space used: 9172719432
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)