BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZD05FM1.SCF screened BAC_end
(906 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1620 470 e-132
3x_Contig783 236 6e-62
>3x_Contig1620
Length = 12263
Score = 470 bits (237), Expect = e-132
Identities = 239/240 (99%)
Strand = Plus / Plus
Query: 86 cgtaagcaaagaaaccaaatccttagcgttcgacattacttttttcagtagagcttattt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12024 cgtaagcaaagaaaccaaatccttagcgttcgacattacttttttcagtagagcttattt 12083
Query: 146 ccttcggaaattcctcaattacgatagcaatgagtcgatggatctctatcgtgagacaac 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12084 ccttcggaaattcctcaattacgatagcaatgagtcgatggatctctatcgtgagacaac 12143
Query: 206 tattcgttggtccctatgaagtgaatttcgataatccatttttttcttcaactttttttc 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12144 tattcgttggtccctatgaagtgaatttcgataatccatttttttcttcaactttttttc 12203
Query: 266 attgttgcaatgttaaaagaatgaaaaaaatggcaaagatctggatgagcatatgtgaaa 325
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 12204 attgttgcaatgttaaaagaatgaaanaaatggcaaagatctggatgagcatatgtgaaa 12263
>3x_Contig783
Length = 2733
Score = 236 bits (119), Expect = 6e-62
Identities = 158/171 (92%)
Strand = Plus / Plus
Query: 619 cgactctttaagcagtaactaaacgttgagcatgcagccggtatttttcaagtttccata 678
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 9 cgactctttaagcagtaactaaacgttgagcatgcagccggtattttcaaggtttccata 68
Query: 679 cgcctccaaatcgggctttatttcactggctttcaaaggttatgcggtgtcacggaattc 738
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 69 cgcctccaaatcgggctttatttcactggcttccagaggttatgcggtgtcacggaattc 128
Query: 739 agggtccaatatcaagttcaattttagattcgagccccgagcagacacgag 789
||| |||| |||||||| |||||| |||| ||||| |||||||||||||
Sbjct: 129 aggttccagtatcaagtccaatttaagatcgaagcccagagcagacacgag 179
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8003
Number of Sequences: 1807
Number of extensions: 8003
Number of successful extensions: 405
Number of sequences better than 1.0e-20: 2
length of query: 906
length of database: 10,358,551
effective HSP length: 16
effective length of query: 890
effective length of database: 10,329,639
effective search space: 9193378710
effective search space used: 9193378710
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)