BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZD05RM1.SCF screened BAC_end
(904 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1154 1074 0.0
>3x_Contig1154
Length = 6277
Score = 1074 bits (542), Expect = 0.0
Identities = 644/663 (97%), Gaps = 12/663 (1%)
Strand = Plus / Plus
Query: 39 aagcttttaaaaaatacatccgcagactcattagctatcatgacatacagaaataaaacg 98
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4061 aagcttttaaaaaatacatccgcagactcattagctatcatgacatacagaaataaaacg 4120
Query: 99 tatgttatgtattcaagctgtgccaaaaagttacaggcaaagattaaacacgatgaagaa 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4121 tatgttatgtattcaagctgtgccaaaaagttacaggcaaagattaaacacgatgaagaa 4180
Query: 159 ccatttaacgccaaacggattccattattatctgagctactttgaaaatcactatagaat 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4181 ccatttaacgccaaacggattccattattatctgagctactttgaaaatcactatagaat 4240
Query: 219 tatttacattaagtagaggtggatacaaaacttaatacgctgccgcagaattttaccaat 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4241 tatttacattaagtagaggtggatacaaaacttaatacgctgccgcagaattttaccaat 4300
Query: 279 tcatccaatgattggcccttgcggtgattggtatcccaatgttgcagagcagtcttgata 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4301 tcatccaatgattggcccttgcggtgattggtatcccaatgttgcagagcagtcttgata 4360
Query: 339 ttttgatttgtgttattagaatgaattacatcaccatgcactctgaataagatggtaata 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4361 ttttgatttgtgttattagaatgaattacatcaccatgcactctgaataagatggtaata 4420
Query: 399 tatgcctcatataactcaaagttcttgttggtagccaaaccttgagccaaactttcaatg 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4421 tatgcctcatataactcaaagttcttgttggtagccaaaccttgagccaaactttcaatg 4480
Query: 459 aaccgacatagctcatcaaatggttgaaaagctntcaaagaacgaatctccaaatcaata 518
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 4481 aaccgacatagctcatcaaatggttgaaaagctttcaaagaacgaatctccaaatcaata 4540
Query: 519 tttgaaggagtcatctggactaattcgtcaaggaatgctgnnatatcgtttttctgcg-a 577
||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct: 4541 tttgagggagtcatctggactaattcgtcaaggaatgctgaataatcgtttttctgcgaa 4600
Query: 578 ccttctct-agtagcttagtgaaatc-gattcg-actgagca-caagtttt-ctgaagg- 631
|||||||| ||||||||||||||||| |||||| |||||||| |||||||| |||||||
Sbjct: 4601 ccttctctaagtagcttagtgaaatcagattcgaactgagcaccaagttttcctgaaggt 4660
Query: 632 ttgaa-ttattcagtt-actagca-cattagctttggcag-atttc-ctcctgttgaagt 686
||||| |||||||||| ||||||| ||||||||||||||| ||||| ||||||||| |||
Sbjct: 4661 ttgaatttattcagttcactagcagcattagctttggcagcatttcgctcctgttgtagt 4720
Query: 687 tta 689
|||
Sbjct: 4721 tta 4723
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7467
Number of Sequences: 1807
Number of extensions: 7467
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 904
length of database: 10,358,551
effective HSP length: 16
effective length of query: 888
effective length of database: 10,329,639
effective search space: 9172719432
effective search space used: 9172719432
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)