BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC36ZD06FM1.SCF screened BAC_end
         (961 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1630                                                        1203   0.0  

>3x_Contig1630 
          Length = 14771

 Score = 1203 bits (607), Expect = 0.0
 Identities = 663/678 (97%), Gaps = 3/678 (0%)
 Strand = Plus / Minus

                                                                        
Query: 87   tagagtgagattaaccaatggtaacattgtttctgcatatatcccaggcgaaggccataa 146
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5364 tagagtgagattaaccaatggtaacattgtttctgcatatatcccaggcgaaggccataa 5305

                                                                        
Query: 147  cgcacaagagcacagtattgtatatgttcgtggaggccgttgccaagatttacctggtgt 206
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5304 cgcacaagagcacagtattgtatatgttcgtggaggccgttgccaagatttacctggtgt 5245

                                                                        
Query: 207  gaaatatcatgttgtccgtggtgccggtgatttggccggtgttgtcaacagaatcagctc 266
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5244 gaaatatcatgttgtccgtggtgccggtgatttggccggtgttgtcaacagaatcagctc 5185

                                                                        
Query: 267  cagatcgaagtacggtgtgaagaaaccaacaaaggagtaagataccaacagtattatatt 326
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5184 cagatcgaagtacggtgtgaagaaaccaacaaaggagtaagataccaacagtattatatt 5125

                                                                        
Query: 327  ctgaattatcaacataaaatatatacttatgtttataaactagaccttcatgtaaatatg 386
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5124 ctgaattatcaacataaaatatatacttatgtttataaactagaccttcatgtaaatatg 5065

                                                                        
Query: 387  cgaataatctatctactggttgctcaatctttatggccacgtgaccgaaattttgttcgg 446
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5064 cgaataatctatctactggttgctcaatctttatggccacgtgaccgaaattttgttcgg 5005

                                                                        
Query: 447  atggtttttccatcatagaaaagtgctgaaaatttagttaacaacgatttcaacgaaaag 506
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5004 atggtttttccatcatagaaaagtgctgaaaatttagttaacaacgatttcaacgaaaag 4945

                                                                        
Query: 507  gtgcccctattggaacaaacagaaagatagattcatcatctgcaaggaattgggaaattt 566
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 4944 gtgcccctattggaacaaacagaaagaaagattcatcatctgcaaggaattgggaaattt 4885

                                                                        
Query: 567  cgaagagactaaacctgctcagtgttgaggaaacttatcagttgatattgntccaagtca 626
            |||||||||||||||||||||||||||||||||||||  ||||||||||| |||||||||
Sbjct: 4884 cgaagagactaaacctgctcagtgttgaggaaacttacaagttgatattgttccaagtca 4825

                                                                        
Query: 627  attgaagaatagctcatagacttgttcgaaaaaatagcct-gggtgatcacttgtgagcc 685
            ||||||||| |||||||||||||||||||||||| ||||| |||||| |||||||||| |
Sbjct: 4824 attgaagaaaagctcatagacttgttcgaaaaaaaagcctggggtgaacacttgtgag-c 4766

                                                                        
Query: 686  cttct-atatcaatacatattaatgttacacctttaaccatacaacctattggttcaaaa 744
            ||||| ||||||||||||| |||||||||||||| ||||||||||||||||||| |||||
Sbjct: 4765 cttctaatatcaatacataataatgttacaccttaaaccatacaacctattggtccaaaa 4706

                              
Query: 745  gacattacaagaagcttt 762
            |||||||  |||||||||
Sbjct: 4705 gacattaacagaagcttt 4688


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7249
Number of Sequences: 1807
Number of extensions: 7249
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 961
length of database: 10,358,551
effective HSP length: 16
effective length of query: 945
effective length of database: 10,329,639
effective search space: 9761508855
effective search space used: 9761508855
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)