BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZD06RM1.SCF screened BAC_end
(939 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1356 997 0.0
>3x_Contig1356
Length = 8043
Score = 997 bits (503), Expect = 0.0
Identities = 594/618 (96%), Gaps = 5/618 (0%)
Strand = Plus / Plus
Query: 40 aagcttcctgcctaaccttaccgtcttccccgtccaacccatgcttccagctgggaatag 99
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 5233 aagcttcctgcctaaccttaccgtctcccccgtccaacccatgcttccagctgggaatag 5292
Query: 100 ggcccatcttctcctccgctattgtctctgcgaacagcttggttccctagtatgggtcct 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5293 ggcccatcttctcctccgctattgtctctgcgaacagcttggttccctagtatgggtcct 5352
Query: 160 accattgaatgatttttttggtgaacttttcagaatcattgcgaagtttgaggatatcga 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5353 accattgaatgatttttttggtgaacttttcagaatcattgcgaagtttgaggatatcga 5412
Query: 220 cctttttcaccaatacgaacaatctcagtttgaatttaatgctttttttgatagttacag 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5413 cctttttcaccaatacgaacaatctcagtttgaatttaatgctttttttgatagttacag 5472
Query: 280 cttttgttgatttcacatagagattttagttgatattgcaattcatttcacgtattcttt 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5473 cttttgttgatttcacatagagattttagttgatattgcaattcatttcacgtattcttt 5532
Query: 340 ttataatagaaggtttcaatagagcttggtttaattttccttttcctttttgttgtttag 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5533 ttataatagaaggtttcaatagagcttggtttaattttccttttcctttttgttgtttag 5592
Query: 400 cttaactcaccgaaccatacaataagatagcaagccaacatgtctgaagccgctgctcca 459
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 5593 cttaactcaccgaaccatacaataagaaagcaagccaacatgtctgaagccgctgctcca 5652
Query: 460 agatagagatcctttcagacctactcttacaaaggtgttgacctagaaaagttgttggga 519
||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||| |
Sbjct: 5653 agaaagagatccttcaagacctactcttacaagggtgttgacctagaaaagttgttggaa 5712
Query: 520 atgccnactgaaaacttcgtt-agttggccccagccagagttagaa-aaagttcgctcgt 577
||||| |||||| |||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct: 5713 atgccaactgaagacttcgttaagttggccccagccagagttagaagaaagttcgctcgt 5772
Query: 578 ggtttg-cttaaaagcca-ctggtttgatgaa-aaattgaaaaccgcttaattgtttggt 634
|||||| || |||||||| ||||||||||||| || |||| | | ||| |||||| || |
Sbjct: 5773 ggtttgtctgaaaagccagctggtttgatgaagaagttgagagctgctaaattgtctgct 5832
Query: 635 ccaaaatatgaaaagcca 652
||| || |||||||||||
Sbjct: 5833 ccagaaaatgaaaagcca 5850
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8484
Number of Sequences: 1807
Number of extensions: 8484
Number of successful extensions: 109
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)