BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZD07FM1.SCF screened BAC_end
(938 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1489 1350 0.0
>3x_Contig1489
Length = 10722
Score = 1350 bits (681), Expect = 0.0
Identities = 790/816 (96%), Gaps = 8/816 (0%)
Strand = Plus / Minus
Query: 85 atcctctagtggacaaggaaattctttccaaaaccatccacaatggatttgataaatatg 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1717 atcctctagtggacaaggaaattctttccaaaaccatccacaatggatttgataaatatg 1658
Query: 145 tgaggaccggtatcacagaatccccatcgaaggaaagcgggaaaatgtactccgttgtgt 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1657 tgaggaccggtatcacagaatccccatcgaaggaaagcgggaaaatgtactccgttgtgt 1598
Query: 205 ttaatcgatggtttgatagtcagtcggaatttaatactcatgttcaaactgaacagttta 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1597 ttaatcgatggtttgatagtcagtcggaatttaatactcatgttcaaactgaacagttta 1538
Query: 265 atattgcattgtctcggaatagaaagcgtttgatgaaggaatacacgtttcactgttttt 324
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1537 atattgcattgtctcggaatagaaagcgtttgatgaaggaatacacgtt-cactgttttt 1479
Query: 325 ccaaatttctctctaaagtattgcaaaatacaatatcattcacggaaagaaaacttgcat 384
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1478 ccaaatttctctctaaagtatagcaaaatacaatatcattcacggaaagaaaacttgcat 1419
Query: 385 tcacagatgaagagtttactgaagagctggaaaagctacaagaacaatatgaatcaccca 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1418 tcacagatgaagagtttactgaagagctggaaaagctacaagaacaatatgaatcaccca 1359
Query: 445 tatacgccaaagatgaatctgaagataaaccatcttatattgacaatgctgaagatactg 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1358 tatacgccaaagatgaatctgaagataaaccatcttatattgacaatgctgaagatactg 1299
Query: 505 ctcaaaaagagagtatggatccaacgaatccatacaacctaccattaggacctgacggat 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1298 ctcaaaaagagagtatggatccaacgaatccatacaacctaccattaggacctgacggat 1239
Query: 565 ttcctatacctcgctggctcatcaaagtccaaggtttagatgtgaaatatgtttgcgaga 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1238 ttcctatacctcgctggctcatcaaagtccaaggtttagatgtgaaatatgtttgcgaga 1179
Query: 625 tctgcggttatcaaatatatcatgggcgtagagaattcgagaaacatttcccactg-aaa 683
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1178 tctgcggtaatcaaatatatcatgggcgtagagaattcgagaaacatttcccactgaaaa 1119
Query: 684 aacattcagaaggtttgaaatctttangcataacttcttctcttgcattcaaagatgtca 743
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 1118 aacattcagaaggtttgaaatctttaggcataactccttctcttgcattcaaagatgtca 1059
Query: 744 ctactatagtagaagtgacagaactttggaaagcattgcaaagcaagagttcacttaaag 803
||||||||||||| |||||||| || ||||||||||||||| |||||| ||| |||||
Sbjct: 1058 ctactatagtagaggtgacagagctatggaaagcattgcaagcaaagagtacac-taaag 1000
Query: 804 tcaggtggaccccttttccaaattattaactgttgaaagaacccggaatggtaccttgaa 863
|||||| || |||||||||||| ||| ||||| |||||||||| | ||||||| ||||||
Sbjct: 999 tcaggt-gaacccttttccaaaatatcaactg-tgaaagaaccggaaatggta-cttgaa 943
Query: 864 acagaagacaatgaaaggtaatgggaatgagtgttc 899
||||| ||||||| ||||||||| | ||||||||||
Sbjct: 942 acagaggacaatg-aaggtaatgtg-atgagtgttc 909
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7471
Number of Sequences: 1807
Number of extensions: 7471
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 938
length of database: 10,358,551
effective HSP length: 16
effective length of query: 922
effective length of database: 10,329,639
effective search space: 9523927158
effective search space used: 9523927158
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)