BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZD08RM1.SCF screened BAC_end
(942 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1310 1059 0.0
>3x_Contig1310
Length = 7790
Score = 1059 bits (534), Expect = 0.0
Identities = 635/657 (96%), Gaps = 9/657 (1%)
Strand = Plus / Minus
Query: 52 tactgtcaaatggttgttaacgtcacattatcttggactgacagacattaatacccgaac 111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3689 tactgtcaaatggttgttaacgtcacattatcttggactgacagacattaatacccgaac 3630
Query: 112 ctttctataactatatataaatctaaacggtatagttactgctggtgccacagcccagaa 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3629 ctttctataactatatataaatctaaacggtatagttactgctggtgccacagcccagaa 3570
Query: 172 gctgggtactactctaagtaaccgaagttcctggatattgacacttattaagcagtgcag 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3569 gctgggtactactctaagtaaccgaagttcctggatattgacacttattaagcagtgcag 3510
Query: 232 tgagtaggacgagctgcatgggcaagatgagcagtatattgcttataagttcgactcaaa 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3509 tgagtaggacgagctgcatgggcaagatgagcagtatattgcttataagttcgactcaaa 3450
Query: 292 agatcccacttggatgaacagatttacatttcatataaactgattctcgactaggcaata 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3449 agatcccacttggatgaacagatttacatttcatataaactgattctcgactaggcaata 3390
Query: 352 tacaccatgaagggccccaaatatctgcaacatgcttgtctggtcaacgatatcttacct 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3389 tacaccatgaagggccccaaatatctgcaacatgcttgtctggtcaacgatatcttacct 3330
Query: 412 ggtaaaaccctaaatcaattataatagtagagacgtatgtccgggtaatctttccgatca 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3329 ggtaaaaccctaaatcaattataatagtagagacgtatgtccgggtaatctttccgatca 3270
Query: 472 atagtataaaagtggncaatttttcaacactttgaacctcttt-aaacactcttacagtt 530
||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 3269 atagtataaaagtggcaaatttttcaacactttgaacctctttcaaacactcttacagtt 3210
Query: 531 caaagattggaaaatctttttgatgtttggtcttaat-aaccaatcatcagtagtggtta 589
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 3209 caaagattggaaaatctttttgatgtttgttcttaataaaccaatcatcagtagtggtta 3150
Query: 590 gtactattctc-agatattattattacacatatacaccattagaaccctacgggtttcgg 648
|||||| |||| ||||| ||||| ||||||||||||||| ||||| ||||| ||||||||
Sbjct: 3149 gtacta-tctcaagataatattaatacacatatacacca-tagaaacctac-ggtttcgg 3093
Query: 649 gtattctcttttcttaaagaatttttttctagggttccttcggaaatttaggaacgg 705
|| ||||||||| | ||||| ||||| ||| |||| ||||||| || |||||||||
Sbjct: 3092 tta-tctcttttc-tcaagaagtttttccta-ggtttcttcggagatctaggaacgg 3039
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,794
Number of Sequences: 1807
Number of extensions: 14794
Number of successful extensions: 137
Number of sequences better than 1.0e-20: 1
length of query: 942
length of database: 10,358,551
effective HSP length: 16
effective length of query: 926
effective length of database: 10,329,639
effective search space: 9565245714
effective search space used: 9565245714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)