BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZD09FM1.SCF screened BAC_end
(983 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1489 1201 0.0
>3x_Contig1489
Length = 10722
Score = 1201 bits (606), Expect = 0.0
Identities = 656/665 (98%), Gaps = 6/665 (0%)
Strand = Plus / Minus
Query: 86 atcctctagtggacaaggaaattctttccaaaaccatccacaatggatttgataaatatg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1717 atcctctagtggacaaggaaattctttccaaaaccatccacaatggatttgataaatatg 1658
Query: 146 tgaggaccggtatcacagaatccccatcgaaggaaagcgggaaaatgtactccgttgtgt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1657 tgaggaccggtatcacagaatccccatcgaaggaaagcgggaaaatgtactccgttgtgt 1598
Query: 206 ttaatcgatggtttgatagtcagtcggaatttaatactcatgttcaaactgaacagttta 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1597 ttaatcgatggtttgatagtcagtcggaatttaatactcatgttcaaactgaacagttta 1538
Query: 266 atattgcattgtctcggaatagaaagcgtttgatgaaggaatacacgtttcactgttttt 325
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1537 atattgcattgtctcggaatagaaagcgtttgatgaaggaatacacgtt-cactgttttt 1479
Query: 326 ccaaatttctctctaaagtattgcaaaatacaatatcattcacggaaagaaaacttgcat 385
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1478 ccaaatttctctctaaagtatagcaaaatacaatatcattcacggaaagaaaacttgcat 1419
Query: 386 tcacagatgaagagtttactgaagagctggaaaagctacaagaacaatatgaatcaccca 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1418 tcacagatgaagagtttactgaagagctggaaaagctacaagaacaatatgaatcaccca 1359
Query: 446 tatacgccaaagatgaatctgaagataaaccatcttatattgacaatgctgaagatactg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1358 tatacgccaaagatgaatctgaagataaaccatcttatattgacaatgctgaagatactg 1299
Query: 506 ctcaaaaagagagtatggatccaacgaatccatacaacctaccattaggacctgacggat 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1298 ctcaaaaagagagtatggatccaacgaatccatacaacctaccattaggacctgacggat 1239
Query: 566 ttnctatacctcgctggctcatcaaagtccaaggtttagatgtgaaatatgtttgcgaga 625
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1238 ttcctatacctcgctggctcatcaaagtccaaggtttagatgtgaaatatgtttgcgaga 1179
Query: 626 tctgcggtaatcaaatatatcatgggcgtagagaattcgagaaaca-ttcccactgaaaa 684
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1178 tctgcggtaatcaaatatatcatgggcgtagagaattcgagaaacatttcccactgaaaa 1119
Query: 685 aacattccagaaggtttgaaatcttttaggcataanctccttctctttgctttcaaagat 744
|||||| |||||||||||||||| ||||||||||| ||||||||| |||| |||||||||
Sbjct: 1118 aacatt-cagaaggtttgaaatc-tttaggcataa-ctccttctc-ttgcattcaaagat 1063
Query: 745 gtcac 749
|||||
Sbjct: 1062 gtcac 1058
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7521
Number of Sequences: 1807
Number of extensions: 7521
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 983
length of database: 10,358,551
effective HSP length: 16
effective length of query: 967
effective length of database: 10,329,639
effective search space: 9988760913
effective search space used: 9988760913
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)