BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC36ZD09RM1.SCF screened BAC_end (941 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1522 995 0.0 >3x_Contig1522 Length = 7810 Score = 995 bits (502), Expect = 0.0 Identities = 539/546 (98%), Gaps = 4/546 (0%) Strand = Plus / Minus Query: 43 cttttattttagataaacaaatcgaacaatcctctaattccgtcccgctggtcatctttt 102 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6386 cttttattttagataaacaaatcgaacaatcctctaattccgtcccgctggtcatctttt 6327 Query: 103 gcaaggctttcatcttttgaatagcttctttattgaatgcattagctttccttctccaag 162 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6326 gcaaggctttcatcttttgaatagcttctttattgaatgcattagctttccttctccaag 6267 Query: 163 atttattgagctccactctcattttaacacacctgtaaatttcttccgcaccaccccgga 222 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6266 atttattgagctccactctcattttaacacacctgtaaatttcttccgcaccaccccgga 6207 Query: 223 agtctaatccgagttgtaatatatcgccgtcctttaacagaaaatccttggacatagtag 282 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6206 agtctaatccgagttgtaatatatcgccgtcctttaacagaaaatccttggacatagtag 6147 Query: 283 ctggctgagaaagtctttgatgattcaagaacgtccctgatgatgatttgacatctttca 342 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6146 ctggctgagaaagtctttgatgattcaagaacgtccctgatgatgatttgacatctttca 6087 Query: 343 caaaccaatttccattatcgtcaactttgaaaacaccatgtgtccttgagacgactttac 402 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6086 caaaccaatttccattatcgtcaactttgaaaacaccatgtgtccttgagacgactttac 6027 Query: 403 tcttgaatacggctggatggaacggttcgggaatagaagaaatggcctctctgacctttt 462 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6026 tcttgaatacggctggatggaacggttcgggaatagaagaaatggcctctctgacctttt 5967 Query: 463 ctgtgtaccttccgattaccaactgagaaccaggaccagcagttcttatgatcggatcat 522 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5966 ctgtgtaccttccgattaccaactgagaaccaggaccagcagttcttatgatcggatcaa 5907 Query: 523 aatagataccgggttta-cagccgatgagttgtctat-aatgcggtc-atctt-aagtga 578 |||||| |||||| ||| ||||||||||||||||||| ||||||||| ||||| |||||| Sbjct: 5906 aatagaaaccggggttaccagccgatgagttgtctataaatgcggtcaatcttaaagtga 5847 Query: 579 ataatc 584 |||||| Sbjct: 5846 ataatc 5841 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6879 Number of Sequences: 1807 Number of extensions: 6879 Number of successful extensions: 34 Number of sequences better than 1.0e-20: 1 length of query: 941 length of database: 10,358,551 effective HSP length: 16 effective length of query: 925 effective length of database: 10,329,639 effective search space: 9554916075 effective search space used: 9554916075 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)