BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZD10FM1.SCF screened BAC_end
(956 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig681 1273 0.0
>3x_Contig681
Length = 3369
Score = 1273 bits (642), Expect = 0.0
Identities = 681/689 (98%), Gaps = 4/689 (0%)
Strand = Plus / Plus
Query: 87 tacgggacgccaccagcaatgttctctttagcaaaagcgtcaagaggcttcaaacattat 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1898 tacgggacgccaccagcaatgttctctttagcaaaagcgtcaagaggcttcaaacattat 1957
Query: 147 acaagatggatggaataagaatggacggtcaccggagggttagcagatcacagttaaccc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1958 acaagatggatggaataagaatggacggtcaccggagggttagcagatcacagttaaccc 2017
Query: 207 atatactatttaaagaaaggacagatgagtacgaccgttcaatcattgattcgaatagca 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2018 atatactatttaaagaaaggacagatgagtacgaccgttcaatcattgattcgaatagca 2077
Query: 267 tatatgccctc-tttaaaaaggataatgtaaatttaacaaaaaaaatggttttaattgaa 325
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2078 tatatgccctcctttaaaaaggataatgtaaatttaacaaaaaaaatggttttaattgaa 2137
Query: 326 gaaaggcggctcaatgactatcttgccgatgacagatatcagaaggaggctggatatgca 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2138 gaaaggcggctcaatgactatcttgccgatgacagatatcagaaggaggctggatatgca 2197
Query: 386 tgcgcattgagagtaattagaaaggttgcatccacagcatacttaagagacttcaaatct 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2198 tgcgcattgagagtaattagaaaggttgcatccacagcatacttaagagacttcaaatct 2257
Query: 446 acaagagaatggtatctcgctgcaagagaaaatgtgaagcgacaacgaatccagttgcta 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2258 acaagagaatggtatctcgctgcaagagaaaatgtgaagcgacaacgaatccagttgcta 2317
Query: 506 cctgtgtttgaacctatcgactttctaccttcattgaaattgaaacttcaagacattcat 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2318 cctgtgtttgaacctatcgactttctaccttcattgaaattgaaacttcaagacattcat 2377
Query: 566 aaacatagagccgccctgccgcattctgacacggctagcacgataatatcaacacaagat 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2378 aaacatagagccgccctgccgcattctgacacggctagcacgataatatcaacacaagat 2437
Query: 626 ctcaatgtcgatgttgaaagtgaaggatctgatcaatttgctttagataagaacagggct 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2438 ctcaatgtcgatgttgaaagtgaaggatctgatcaatttgctttagataagaacagggct 2497
Query: 686 tgtctacagttactccgaaaggacgaacgtatttttgaatattatggaatgcttctcata 745
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct: 2498 gttctacagttactccgaaaggacgaacgta-ttttgaata-tatggaatgcttctcata 2555
Query: 746 ttatccggtctattgcccaaacctgncgt 774
|||| |||||||||| ||||||||| |||
Sbjct: 2556 ttat-cggtctattggccaaacctggcgt 2583
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7005
Number of Sequences: 1807
Number of extensions: 7005
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 956
length of database: 10,358,551
effective HSP length: 16
effective length of query: 940
effective length of database: 10,329,639
effective search space: 9709860660
effective search space used: 9709860660
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)