BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC36ZD10RM1.SCF screened BAC_end
         (951 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig660                                                          961   0.0  

>3x_Contig660 
          Length = 1656

 Score =  961 bits (485), Expect = 0.0
 Identities = 545/556 (98%), Gaps = 8/556 (1%)
 Strand = Plus / Minus

                                                                       
Query: 48  ttcagattcctctctgaaattgatggtcttcagtgcacgttcaacgatctcacgggcttt 107
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 ttcagattcctctctgaaattgatggtcttcagtgcacgttcaacgatctcacgggcttt 756

                                                                       
Query: 108 ttcgacttcacttagttgtaaatggaaagccatgtagttcatccataccacggaagagtt 167
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 ttcgacttcacttagttgtaaatggaaagccatgtagttcatccataccacggaagagtt 696

                                                                       
Query: 168 tggattacccatgattaaacgttcaaagtcgcctacggattctggaatcctggtgttgat 227
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 tggattacccatgattaaacgttcaaagtcgcctacggattctggaatcctggtgttgat 636

                                                                       
Query: 228 atcaacagtcttatcttgaacaatctgagtcttcttcttcttttgcttcctagatttaat 287
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 atcaacagtcttatcttgaacaatctgagtcttcttcttcttttgcttcctagatttaat 576

                                                                       
Query: 288 gaagtcctcatcttcttcggaggattcttcttcgtcttgagcttggtcaaggatgcttgc 347
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 gaagtcctcatcttcttcggaggattcttcttcgtcttgagcttggtcaaggatgcttgc 516

                                                                       
Query: 348 agtccaatcgaatccggtactcaatgaaagtccgtcagtgctgactggggcagaattttt 407
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 agtccaatcgaatccggtactcaatgaaagtccgtcagtgctgactggggcagaattttt 456

                                                                       
Query: 408 aggtctagttgtgtcttccgcttctgaatcggaatgtccaaattgagcatcgtccatgat 467
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 aggtctagttgtgtcttccgcttctgaatcggaatgtccaaattgagcatcgtccatgat 396

                                                                       
Query: 468 ctcatcttggtcttcatctttgtcttcatcttttgtcg-aagcatcgctttccttcttgt 526
           ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||
Sbjct: 395 ctcatcttggtcttcatctttgtcttcatcttt-gtcggaagcatcgctttccttct-gt 338

                                                                       
Query: 527 c--tttttcatatcgatatctagatcatctacacctttcgagctcttctttctttttcat 584
           |  | || ||||||||||||||||||||||||||| |||||||||||| ||||| |||||
Sbjct: 337 ccatcttccatatcgatatctagatcatctacacc-ttcgagctcttc-ttcttcttcat 280

                           
Query: 585 tacctttcttcaacgg 600
           |||| |||||||||||
Sbjct: 279 tacc-ttcttcaacgg 265


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,707
Number of Sequences: 1807
Number of extensions: 10707
Number of successful extensions: 120
Number of sequences better than 1.0e-20: 1
length of query: 951
length of database: 10,358,551
effective HSP length: 16
effective length of query: 935
effective length of database: 10,329,639
effective search space: 9658212465
effective search space used: 9658212465
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)