BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZD11FM1.SCF screened BAC_end
(913 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1770 1158 0.0
>3x_Contig1770
Length = 29267
Score = 1158 bits (584), Expect = 0.0
Identities = 663/688 (96%), Gaps = 1/688 (0%)
Strand = Plus / Plus
Query: 87 aaaccatccttccaaacaggtgtcactgatagtgaacggaacataatcatactgagtttc 146
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19129 aaaccagccttccaaacaggtgtcactgatagtgaacggaacataatcatactgagtttc 19188
Query: 147 cgagtcgcgttcctgtcttggtggtactatggtaatatgtccgacacactcttttgaagc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19189 cgagtcgcgttcctgtcttggtggtactatggtaatatgtccgacacactcttttgaagc 19248
Query: 207 aatctttgacacttaagtatagaaactgcgggaaccagtataactaccaagccggaacga 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19249 aatctttgacacttaagtatagaaactgcgggaaccagtataactaccaagccggaacga 19308
Query: 267 tgacagccaactctggattgactatctatgtgcaattgataataacgaccagaggagctg 326
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 19309 tgacagccaactctggattgactatctatgtgcaattgagaataacgaccagaggagctg 19368
Query: 327 ccagatggtagatcctaaagagcagatatggtagaggttaaagcttaaatttgaaatgct 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19369 ccagatggtagatcctaaagagcagatatggtagaggttaaagcttaaatttgaaatgct 19428
Query: 387 gccgaatcgaaattataaactgtggtgtcggatccaatgatgcagtgtcacgtgatgcga 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19429 gccgaatcgaaattataaactgtggtgtcggatccaatgatgcagtgtcacgtgatgcga 19488
Query: 447 cgggaataagagtcattggcctcaaaccaagggagggatagcgactggcgatgggagacg 506
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 19489 cgggaataagagtcattggcctcaaaccaagggagggatagcgactggcgaggggagacg 19548
Query: 507 gactcaaccacacaagtacaaatgtgtaattgtgtttttgtccactgtactatgtgaatt 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19549 gactcaaccacacaagtacaaatgtgtaattgtgtttttgtccactgtactatgtgaatt 19608
Query: 567 gaaaccttcctacataattagagtttgagaattccaagttgatttctcatacgtaatgat 626
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 19609 gaaaccttcctacataataagagtttgagaattccaagttgattcctcatacgtaatgat 19668
Query: 627 ttataatgatattcgatagtatacacacacattctat-tggggacagaaatattttctta 685
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||| | |
Sbjct: 19669 atataatgatattcgatagtatacacacacattctatatggggacagaagtatttcttca 19728
Query: 686 ttagaatggctgcacctcttcttcatcttaaatttggaacggtttattgagtcctacatt 745
| | |||||||||| |||||| |||| || ||| ||||||||||| | |||||||| |
Sbjct: 19729 taggtatggctgcacgtcttctccatcatagattgtgaacggtttatcgtgtcctacaat 19788
Query: 746 ggcaagggataagttcttggttctcaaa 773
||||| ||||||||||||||| ||||||
Sbjct: 19789 ggcaatggataagttcttggtactcaaa 19816
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6274
Number of Sequences: 1807
Number of extensions: 6274
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 913
length of database: 10,358,551
effective HSP length: 16
effective length of query: 897
effective length of database: 10,329,639
effective search space: 9265686183
effective search space used: 9265686183
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)