BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC36ZD11RM1.SCF screened BAC_end
         (937 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1313                                                        1185   0.0  

>3x_Contig1313 
          Length = 8010

 Score = 1185 bits (598), Expect = 0.0
 Identities = 639/650 (98%), Gaps = 2/650 (0%)
 Strand = Plus / Plus

                                                                       
Query: 70  gattaagaaattgacacttttaaaaggctcctcgatcaccttaaacaggctataatcgat 129
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2   gattaagaaattgacacttttaaaaggctcctcgatcaccttaaacaggctataatcgat 61

                                                                       
Query: 130 aatgtcagctgaagaagcaaacacgagatctaaagaaccaacgtcaattttctctgtccc 189
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62  aatgtcagctgaagaagcaaacacgagatctaaagaaccaacgtcaattttctctgtccc 121

                                                                       
Query: 190 tgccgaaactatattagcttttttcattgaaccttcgacgagtaaaacgttgtctctatc 249
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 tgccgaaactatattagcttttttcattgaaccttcgacgagtaaaacgttgtctctatc 181

                                                                       
Query: 250 tagtaatagtattttatcttcatctttcacatcattgataataaagttacactcaaaaaa 309
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 tagtaatagtattttatcttcatctttcacatcattgataataaagttacactcaaaaaa 241

                                                                       
Query: 310 cccatacccctgcacatcttgctctactacccttacatggttctttttgaagtaatcaat 369
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 cccatacccctgcacatcttgctctactacccttacatggttctttttgaagtaatcaat 301

                                                                       
Query: 370 gtaaagtaatttcccggattgccatgttatagtgtcaatatcgcaacctagttgtaacag 429
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 gtaaagtaatttcccggattgccatgttatagtgtcaatatcgcaacctagttgtaacag 361

                                                                       
Query: 430 aacgttgaagtctaacttgaaaaaagccctctcgcgcttatgcaatgataacacgcacat 489
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 aacgttgaagtctaacttgaaaaaagccctctcgcgcttatgcaatgataacacgcacat 421

                                                                       
Query: 490 gagatgcattgacgttacaaatcctataagatcattggtactggagtaagtgagtttagc 549
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 gagatgcattgacgttacaaatcctataagatcattggtactggagtaagtgagtttagc 481

                                                                       
Query: 550 agtaaactttgggggtacgttatcaaatttatatgaacataccaactcgatatcatactt 609
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 482 agtaaactttgggggtacgttatcaagtttatatgaacataccaactcgatatcatactt 541

                                                                       
Query: 610 ttcaactgtctggtggtagtggaaatccatggagtttatctcttcagaagcaa-gcattt 668
           |||| |||||||||||||||||||||||||||||| ||||||| |||| |||| ||||  
Sbjct: 542 ttcagctgtctggtggtagtggaaatccatggagtatatctctccagaggcaaggcatag 601

                                                             
Query: 669 aatgcacgtttcatttttatcagaacactttttggttaggtattactaac 718
           ||||||||| |||||||||||||||||| || ||||||||||||||||||
Sbjct: 602 aatgcacgtatcatttttatcagaacac-ttctggttaggtattactaac 650


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7986
Number of Sequences: 1807
Number of extensions: 7986
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)