BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZD12FM1.SCF screened BAC_end
(949 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1250 912 0.0
>3x_Contig1250
Length = 5563
Score = 912 bits (460), Expect = 0.0
Identities = 631/675 (93%), Gaps = 10/675 (1%)
Strand = Plus / Minus
Query: 131 tgcgatgacttcttcttgaattctacctcattcttgttcatttcatggccaaccacatat 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5563 tgcgatgacttcttcttgaattctacctcattcttgttcatttcatggccaaccacatat 5504
Query: 191 ctcattccaaatattctctttgagatattataatactgtccgctcaagtagaatataatt 250
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 5503 ctcattccaaatattctctttgagatatcataatactgtccgctcaagtagaatataatt 5444
Query: 251 aagtgcaaattcaaagtggaatccaagatgtccctgaaactcttgccattgaatactttc 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5443 aagtgcaaattcaaagtggaatccaagatgtccctgaaactcttgccattgaatactttc 5384
Query: 311 aagaaaccagatcccctctcattgagcttatacttgtagaatactttcgataatatccac 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5383 aagaaaccagatcccctctcattgagcttatacttgtagaatactttcgataatatccac 5324
Query: 371 ggtaccccacaataactgatagcgaaaccaatccttcgcaggagtctcgcaacacctttt 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5323 ggtaccccacaataactgatagcgaaaccaatccttcgcaggagtctcgcaacacctttt 5264
Query: 431 cctcgcctatcaacatacgccaaatcaacgtactcttctccaagcgttctcctatacctt 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5263 cctcgcctatcaacatacgccaaatcaacgtactcttctccaagcgttctcctatacctt 5204
Query: 491 agtgttgtaattgacaagtatatcaacttgctgaagatcattatctcactaacatacctg 550
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 5203 agtgttgtaattgacaagtatatcaacttgctgaggatcattatctcactaacatacctg 5144
Query: 551 gtagtgaactgttgtcccttaac-ttncgtattacatcctggatcttttgt-acaggcag 608
|||||||||||||||||||||| || |||| ||||||||||||||||||| |||| ||
Sbjct: 5143 ttagtgaactgttgtcccttaactttccgtagtacatcctggatcttttgtaacagcaag 5084
Query: 609 tttttcacagtttcattcttttgatgc-cctgaaacatacttgg-gcctcagcaaat-gg 665
|||| |||||| |||| |||||||||| |||||| ||||| || || ||||||||| ||
Sbjct: 5083 ttttccacagtatcatccttttgatgcgcctgaactatactaggtgcatcagcaaatggg 5024
Query: 666 aactttatgt-ttgtgccattgcttggctttcg-caatttgggttcttattc-cttttga 722
||||| |||| | ||||||||||||| || ||| || |||| |||||||||| ||||||
Sbjct: 5023 aacttcatgtctggtgccattgcttgtctctcgtcagtttgtgttcttattcgtttttga 4964
Query: 723 aaaagttaaagggtgaaatttgttcaa-tggaaaaatgaa-ttttttttggttaattata 780
| | |||| | ||| || ||| |||| |||| ||||||| |||| |||| ||||| |||
Sbjct: 4963 agatgttagatggttgaaattgatcaattggagaaatgaagttttatttgattaatcata 4904
Query: 781 gggtccgaaaccaga 795
|||| ||||||||||
Sbjct: 4903 gggttcgaaaccaga 4889
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8524
Number of Sequences: 1807
Number of extensions: 8524
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 949
length of database: 10,358,551
effective HSP length: 16
effective length of query: 933
effective length of database: 10,329,639
effective search space: 9637553187
effective search space used: 9637553187
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)