BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC36ZD12RM1.SCF screened BAC_end (981 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig913 844 0.0 >3x_Contig913 Length = 2857 Score = 844 bits (426), Expect = 0.0 Identities = 487/506 (96%), Gaps = 1/506 (0%) Strand = Plus / Plus Query: 47 taggaaaaaaaatcgaaactgatgtttaggaaaaagaataggaaactttgagaaacataa 106 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 2246 taggaaaaaaaatcgaaactgaggtttaggaaaaagaataggaaactttgagaaacataa 2305 Query: 107 gactaacagtgagtggtactcatcaatccaacttggctcttttgcattgcagcatacgct 166 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2306 gactaacagtgagtggtactcatcaatccaacttggctcttttgcattgcagcatacgct 2365 Query: 167 tcttcctttcgtttacgattgtatactgtgagatcgctaccaggaaacggcaggtttttt 226 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2366 tcttcctttcgtttacgattgtatactgtgagatcgctaccaggaaacggcaggtttttt 2425 Query: 227 ttctctttcgtgcaatttaataccgttagcaattaatttaatttattcacatcgatattg 286 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2426 ttctctttcgtgcaatttaataccgttagcaattaatttaatttattcacatcgatattg 2485 Query: 287 gctgaatctcactcatattatttactttcagtttgtccaaccactcaactgtctcgagat 346 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2486 gctgaatctcactcatattatttactttcagtttgtccaaccactcaactgtctcgagat 2545 Query: 347 tgctcactttatcgctgaattttaccgatagtacatttatattacaggcattttttaggt 406 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2546 tgctcactttatcgctgaattttaccgatagtacatttatattacaggcattttttaggt 2605 Query: 407 tttgttattcctaagtctgttgtatttggttttggtttcgtatttttttctttgaattga 466 ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct: 2606 tttgttattcctaagtctgttgtatttggttttggtttcgtatttcttcctttgaattga 2665 Query: 467 ccaaattcttacccataattccaccagtttgagacctgctgttggcagaaagtccttatt 526 | ||||||| |||||||||| ||| | |||||| |||||| || ||||| ||| |||| Sbjct: 2666 caaaattctaacccataattacacgatgttgagatctgctgctgtcagaaggtctttatc 2725 Query: 527 aaaagaccaagtttctttcgttactt 552 ||| | | ||||||| |||||||||| Sbjct: 2726 aaagggcgaagtttc-ttcgttactt 2750 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 16,567 Number of Sequences: 1807 Number of extensions: 16567 Number of successful extensions: 79 Number of sequences better than 1.0e-20: 1 length of query: 981 length of database: 10,358,551 effective HSP length: 16 effective length of query: 965 effective length of database: 10,329,639 effective search space: 9968101635 effective search space used: 9968101635 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)