BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZE01FM1.SCF screened BAC_end
(931 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1597 1350 0.0
>3x_Contig1597
Length = 14240
Score = 1350 bits (681), Expect = 0.0
Identities = 784/809 (96%), Gaps = 7/809 (0%)
Strand = Plus / Plus
Query: 88 gatgttatgaacataaacaattaaagctcaccatacgtgaggaagtaaaaagatattaga 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 gatgttatgaacataaacaattaaagctcaccatacgtgaggaagtaaaaagatattaga 249
Query: 148 tatctcgatttcgtaagacggtagatgtacgataagatattgggtactaaaattcgcctc 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tatctcgatttcgtaagacggtagatgtacgataagatattgggtactaaaattcgcctc 309
Query: 208 taattgtttcgcttggaaagtttttactttattattgcagggttagactacatggcatat 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 taattgtttcgcttggaaagtttttactttattattgcagggttagactacatggcatat 369
Query: 268 aatgtccttttaccgtacaagtaactcatcgtcatcatccacaccgtcaacaatggcaac 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aatgtccttttaccgtacaagtaactcatcgtcatcatccacaccgtcaacaatggcaac 429
Query: 328 tgagaaagacttagcaaatgatattgttttaaacaatgcagcagaggattcaattagtga 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tgagaaagacttagcaaatgatattgttttaaacaatgcagcagaggattcaattagtga 489
Query: 388 tattgctttttctccacagtcagacttcatgttcagtgtaagttcatgggatagcaaagt 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 tattgctttttctccacagtcagacttcatgttcagtgtaagttcatgggatagcaaagt 549
Query: 448 tagaatatgggatgtccaaagtggatcccctcaaggaagggcacagtacgatcatcaagc 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 tagaatatgggatgtccaaagtggatcccctcaaggaagggcacagtacgatcatcaagc 609
Query: 508 tccagtgttaactacgagatggtcaatcgatggaactaaagttgcaagtggcggctgtga 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 tccagtgttaactacgagatggtcaatcgatggaactaaagttgcaagtggcggctgtga 669
Query: 568 taatgtcttaaaagtatttgacgtgactacaggacaagcacagcagatcggacaacacaa 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 taatgtcttaaaagtatttgacgtgactacaggacaagcacagcagatcggacaacacaa 729
Query: 628 cagtgctgtacaatctttaagatttgtatcatgtggaccaaccaatcaagagtgcatcgc 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 cagtgctgtacaatctttaagatttgtatcatgtggaccaaccaatcaagagtgcatcgc 789
Query: 688 tacgggttcttgggataagacagtaaagtactgggatcttatgttctcacagccgataat 747
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 790 tacgggttcttgggataagacagtaaagtactgggatcttaggtctccacagccgataat 849
Query: 748 gacattacaaatgccccgatagattgtactgcatggatgcttcacaaaaaactaaggtgg 807
||||||||||||| ||||| ||| |||||||||||||||||||||||||| || ||| |
Sbjct: 850 gacattacaaatg-cccgaaagagtgtactgcatggatgcttcacaaaaacttatggt-g 907
Query: 808 gtaggcatttcttgaaagacatattgccggtcattagacttgaataaatccaggtcaaat 867
|||||||| | |||||||||||| | |||| | ||||||||||| ||||||||||||||
Sbjct: 908 gtaggcatggc-tgaaagacatatag-cggt-aatagacttgaat-aatccaggtcaaat 963
Query: 868 actttaaaaactctcttacacctttgaaa 896
|||||| | ||||| |||||||||||
Sbjct: 964 -ctttaagacatctctatcacctttgaaa 991
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5490
Number of Sequences: 1807
Number of extensions: 5490
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 931
length of database: 10,358,551
effective HSP length: 16
effective length of query: 915
effective length of database: 10,329,639
effective search space: 9451619685
effective search space used: 9451619685
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)