BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC36ZE01RM1.SCF screened BAC_end
         (931 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1641                                                        1189   0.0  

>3x_Contig1641 
          Length = 13261

 Score = 1189 bits (600), Expect = 0.0
 Identities = 712/740 (96%), Gaps = 7/740 (0%)
 Strand = Plus / Minus

                                                                        
Query: 43   ctttactgatacttcgatctcttatatcgttggaataatcatcgactgcataaacaactc 102
            |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 3815 ctttactgatacttcgatctctcaaatcgttggaataatcatcgactgcataaacaactc 3756

                                                                        
Query: 103  tatcctgaaaatataaggatttaggttgtctccgtatatttaaacttgtacatatgtaat 162
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3755 tatcctgaaaatataaggatttaggttgtctccgtatatttaaacttgtacatatgtaat 3696

                                                                        
Query: 163  aatctttgtaaaattatactatatttaagatttatacccatctttggaccaccactgcat 222
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3695 aatctttgtaaaattatactatatttaagatttatacccatctttggaccaccactgcat 3636

                                                                        
Query: 223  tgcataggtcttgatctttcaaagtggagtcaaattcgtcaatgggttttacgggaaatg 282
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3635 tgcataggtcttgatctttcaaagtggagtcaaattcgtcaatgggttttacgggaaatg 3576

                                                                        
Query: 283  catggcttattgtaaatgggcgcatttctgctgtgttagctttaacatgctggtacaaga 342
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3575 catggcttagtgtaaatgggcgcatttctgctgtgttagctttaacatgctggtacaaga 3516

                                                                        
Query: 343  atctgatggtatctgtagagttacaacgtaacacctccctcttcccagaagcatatctga 402
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3515 atctgatggtatctgtagagttacaacgtaacacctccctcttcccagaagcatatctga 3456

                                                                        
Query: 403  tctgtacactagtgtctccctttagctcgtcatctggcgatttttctttgatttcagtcc 462
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3455 tctgtacactagtgtctccctttagctcgtcatctggcgatttttctttgatttcagtcc 3396

                                                                        
Query: 463  ctactggagtagattcggcaggcgatgctgattgagagtttactgcatcaccaggaatgg 522
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3395 ctactggagtagattcggcaggcgatgctgattgagagtttactgcatcaccaggaatgg 3336

                                                                        
Query: 523  gtgagcccaatctcttacctgttccttggaagccactcacttttctcttaagtggaacgt 582
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 3335 gtgagcccaatctcttacctgttccttggaagccactcacttttctcttaggtggaacgt 3276

                                                                        
Query: 583  aaggctctttcaac-ttttatataccgtgacatcgacctcttgttcgaatt-gacgttca 640
            ||||||||| |||| ||||||| ||||||||||||||||||||| |||||| ||||| ||
Sbjct: 3275 aaggctcttccaactttttatagaccgtgacatcgacctcttgtccgaattcgacgtcca 3216

                                                                        
Query: 641  attactgcaaaggagctctttccttggtttag-tctttcaaaaagaaactattttttggg 699
            || ||||||||||||||| ||||||||||||| ||||||||| |||||||||||| ||||
Sbjct: 3215 ataactgcaaaggagctc-ttccttggtttagttctttcaaatagaaactattttctggg 3157

                                                                        
Query: 700  tcgtcgtaaccatttttttttgccattaccgacttgggaatcattttttccaaaaccgta 759
            |||||||||| | | |  |||||||| |||||||| ||||||  | ||||||||| ||||
Sbjct: 3156 tcgtcgtaacga-tatagtttgccatcaccgactt-ggaatccatctttccaaaa-cgta 3100

                                
Query: 760  ttttcccttgtcaccttttt 779
             ||||||||||||| |||||
Sbjct: 3099 atttcccttgtcactttttt 3080


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9004
Number of Sequences: 1807
Number of extensions: 9004
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 931
length of database: 10,358,551
effective HSP length: 16
effective length of query: 915
effective length of database: 10,329,639
effective search space: 9451619685
effective search space used: 9451619685
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)