BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZE02FM1.SCF screened BAC_end
(927 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1512 680 0.0
3x_Contig849 448 e-126
>3x_Contig1512
Length = 8803
Score = 680 bits (343), Expect = 0.0
Identities = 346/347 (99%)
Strand = Plus / Minus
Query: 90 gcgatttaaagaaggctatcgactactatgaaaaatctctaactgaacatcgtaccccag 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 gcgatttaaagaaggctatcgactactatgaaaaatctctaactgaacatcgtaccccag 288
Query: 150 atatcttaacgaaattaagaaacacagaaaaggaactcaagcaaaaggaagcagaatctt 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 atatcttaacgaaattaagaaacacagaaaaggaactcaagcaaaaggaagcagaatctt 228
Query: 210 acatggaccctgaaaaggcagaagaagctagattacaaggtaaggaatacttcactaagg 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 acatggaccctgaaaaggcagaagaagctagattacaaggtaaggaatacttcactaagg 168
Query: 270 ctgactggccaaaggctgtcgaagcatacactgaaatgatcaaaagaaatccaaacgatg 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 ctgactggccaaaggctgtcgaagcatacactgaaatgatcaaaagaaatccaaacgatg 108
Query: 330 ccagaggttactctaacagagctgcagctctatctaagttgatgtcattcgctgacgcca 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 ccagaggttactctaacagagctgcagctctatctaagttgatgtcattcgctgacgcca 48
Query: 390 ttagagactgtgacaaagccatcgagaaggatccaaactttgtcaga 436
|||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 47 ttagagactgtgacaaagccatcgagaaagatccaaactttgtcaga 1
>3x_Contig849
Length = 3479
Score = 448 bits (226), Expect = e-126
Identities = 261/270 (96%), Gaps = 2/270 (0%)
Strand = Plus / Minus
Query: 654 cagaagttgcatcaattttacaagaccctgtca-tgcaatctatactctcacaagctcag 712
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 3479 cagaagttgcatcaattttacaagaccctgtcaatgcaatctatactctcaaaagctcag 3420
Query: 713 caaaatcctgctgctttacaggaacacatgagaaacccagacgttttcaagaagattcaa 772
|||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 3419 caaaatcctgctgctttaaaggaacacatgagaaacccagacgtcttcaagaaaattcaa 3360
Query: 773 accttgatcgccgctggtataatcaagactcgctagttctacagacagtcagtcatatta 832
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3359 accttaatcgccgctggtataatcaagactcgctagttctacagacagtcagtcatatta 3300
Query: 833 ctcgacctgaaacttcaacatgaattattatatatacacgcctatgtttagcatttaatt 892
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 3299 ctcgccctgaaacttcaacatgaattagtatatatacacgcctatgtttagcatttaatt 3240
Query: 893 ctcttccaga-atatatctataccattatt 921
|||||||||| |||||||||||||||||||
Sbjct: 3239 ctcttccagatatatatctataccattatt 3210
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6173
Number of Sequences: 1807
Number of extensions: 6173
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 2
length of query: 927
length of database: 10,358,551
effective HSP length: 16
effective length of query: 911
effective length of database: 10,329,639
effective search space: 9410301129
effective search space used: 9410301129
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)