BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZE02RM1.SCF screened BAC_end
(927 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1801 1122 0.0
>3x_Contig1801
Length = 57606
Score = 1122 bits (566), Expect = 0.0
Identities = 645/666 (96%), Gaps = 4/666 (0%)
Strand = Plus / Plus
Query: 44 gcttagcctttgaatgaaaacattttcttgcttcctatgcacagccttgcgctctagttc 103
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 48056 gcttagcctttgaatgaaaacatcttcttgcttcctatgcacagccttgcgctctagttc 48115
Query: 104 ca-ggatttttccatggtgtcaagagccttcaacttcaaatcgacttttgtcatttgagt 162
|| ||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||
Sbjct: 48116 caaggatttttccatggtatcaagagccttcaacttcaaatcgacttttgttagttgagt 48175
Query: 163 attgattaaatcatttgtcgtcctattcatcaatttttcttggttggtagcgaatacatg 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48176 attgattaaatcatttgtcgtcctattcatcaatttttcttggttggtagcgaatacatg 48235
Query: 223 atagcgtagccccaatgtatctagagcgacttctgtgccgtccttcactgttattctagc 282
| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 48236 agagcgtagccccaaggtagctagagcgacttctgtgccgtccttcactgttattctagc 48295
Query: 283 atcagattcagcatttgtgaccgctactgcttgttcttctggcagctcttgtttttccga 342
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 48296 atcagattcagcatttgtgaccgttactgcttgttcttctggcagctcttgtttttccga 48355
Query: 343 tggtgtttccttgtttgataatgcttcattctctaaagattcttcttgatgaagttcttc 402
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 48356 tggtgtttccttgtttgataatgcttcattctctaaagattcttcttgatgaggttcttc 48415
Query: 403 cactggaatcgcttcttcttgactaccttcctctttattcttttcttccgctttttgtag 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48416 cactggaatcgcttcttcttgactaccttcctctttattcttttcttccgctttttgtag 48475
Query: 463 cccttcttctcctgttttttcagctcttacttctgtagcttctttttcttcattctctgg 522
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 48476 cccttcttctcctgttttttcagctcttacttctgttgcttctttttcttcattctctgg 48535
Query: 523 tgtatttgcatttttctcatttgaagtgtcaacagttacatctgaatttgctacttgctc 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 48536 tgtatttgcatttttctcatttgaagtgtcaacagttacatctgaatttgctacttgttc 48595
Query: 583 tgctgctggagcagtttcttcagttgctgcggagtgatctgcggcatttgaatttgcaag 642
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||
Sbjct: 48596 tgctgctggagcagttccttcagttgctgtggagtgatctgcggcatttgaatttgc-ag 48654
Query: 643 tttcggattttgcagctcccgcttctgtatgctcaatcttccctggcgtcagtttttgat 702
||| |||||| ||||||||| ||||||||||||||| ||||||||||||||||||| ||
Sbjct: 48655 gttcagatttttcagctcccgtttctgtatgctcaat-ttccctggcgtcagttttt-at 48712
Query: 703 ttcttc 708
||||||
Sbjct: 48713 ttcttc 48718
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8782
Number of Sequences: 1807
Number of extensions: 8782
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 927
length of database: 10,358,551
effective HSP length: 16
effective length of query: 911
effective length of database: 10,329,639
effective search space: 9410301129
effective search space used: 9410301129
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)