BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZE03RM1.SCF screened BAC_end
(913 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1663 1116 0.0
>3x_Contig1663
Length = 13533
Score = 1116 bits (563), Expect = 0.0
Identities = 563/563 (100%)
Strand = Plus / Minus
Query: 50 gagccaatggtattgatgcacagacttcaaaagcaccgttcttatcccgaatcgctcatc 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gagccaatggtattgatgcacagacttcaaaagcaccgttcttatcccgaatcgctcatc 504
Query: 110 aagtacaaagctacgatgattttggcttcttttatacctgctcacttaccaactcctata 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 aagtacaaagctacgatgattttggcttcttttatacctgctcacttaccaactcctata 444
Query: 170 tgtcacgacagatgcgtttttttaacaaggtctgccagatcgaaattttatttagaaaac 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tgtcacgacagatgcgtttttttaacaaggtctgccagatcgaaattttatttagaaaac 384
Query: 230 atatataaatatctgcaccgtatggtaactatctcatcaacacaagagaagaaggacatg 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 atatataaatatctgcaccgtatggtaactatctcatcaacacaagagaagaaggacatg 324
Query: 290 gtacatcaatcaaccaagcacctttgatcattgccttaaaggccctctgcacaatatgac 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gtacatcaatcaaccaagcacctttgatcattgccttaaaggccctctgcacaatatgac 264
Query: 350 tgaagtagaacccaatgtaacaagagaagcttccgaacaaccatctaccgaaacagcagc 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tgaagtagaacccaatgtaacaagagaagcttccgaacaaccatctaccgaaacagcagc 204
Query: 410 cgaaacaggtaaaacagatgaacaacgcaagataaccacaacagataagacggacgataa 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 cgaaacaggtaaaacagatgaacaacgcaagataaccacaacagataagacggacgataa 144
Query: 470 accagtggaagaaccagctgagaagaaacccaaaacctctgcacaaataaaggcgtctca 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 accagtggaagaaccagctgagaagaaacccaaaacctctgcacaaataaaggcgtctca 84
Query: 530 ttggaaaccagggtctcttgaaataaaagctttcacaggatacgccttgaaactacgatg 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83 ttggaaaccagggtctcttgaaataaaagctttcacaggatacgccttgaaactacgatg 24
Query: 590 ttggaagaatgttgacaaggaag 612
|||||||||||||||||||||||
Sbjct: 23 ttggaagaatgttgacaaggaag 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5661
Number of Sequences: 1807
Number of extensions: 5661
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 913
length of database: 10,358,551
effective HSP length: 16
effective length of query: 897
effective length of database: 10,329,639
effective search space: 9265686183
effective search space used: 9265686183
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)