BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZE05FM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig146 1435 0.0
>3x_Contig146
Length = 1181
Score = 1435 bits (724), Expect = 0.0
Identities = 779/792 (98%), Gaps = 4/792 (0%)
Strand = Plus / Minus
Query: 86 ttgaatgaattgagatggaaaaactacgaagaatctggatccatcagcagtgaaggttcc 145
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 1025 ttgaatgaattgagatggaaaaattacgaagaatctggatccatcagcagtgaaggtccc 966
Query: 146 atattagaacccatcttctacaaatacctactaagcttttgtgagaatacgggtgatgta 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 965 atattagaacccatcttctacaaatacctactaagcttttgtgagaatacgggtgatgta 906
Query: 206 gtaaaacaaggttgcgaaaggatcatcatccatgaaacttgggaacccatggacaaagaa 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 905 gtaaaacaaggttgcgaaaggatcatcatccatgaaacttgggaacccatggacaaagaa 846
Query: 266 gctgatcaatggtatagtaggtc-tgcatatgatatttctcgactcatctcagatacgtt 324
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 845 gctgatcaatggtatagtaggtcctgcatatgatatttctcgactcatctcagatacgtt 786
Query: 325 aagactagtggaacaacttcaatggaatgatctggcccagttgggtactgcctactctgt 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 aagactagtggaacaacttcaatggaatgatctggcccagttgggtactgcctactctgt 726
Query: 385 agttttgggaaagatcagtgaatgtgttctccattacgcaagatgtatggaagatatagt 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 agttttgggaaagatcagtgaatgtgttctccattacgcaagatgtatggaagatatagt 666
Query: 445 gagagaagatctatgcataagcgaaaatgatgaacaaaatggtcaaggccaaggcatggg 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 gagagaagatctatgcataagcgaaaatgatgaacaaaatggtcaaggccaaggcatggg 606
Query: 505 acacatactgggcaacgatgtatctatcttcaaggacatgaaatcagcgatccaatcttc 564
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 acacagactgggcaacgatgtatctatcttcaaggacatgaaatcagcgatccaatcttc 546
Query: 565 caagttgtggaacaaccaatggaaacaacaattgcaaggcaagagaagacgttcaaatgt 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 caagttgtggaacaaccaatggaaacaacaattgcaaggcaagagaagacgttcaaatgt 486
Query: 625 tgatgctgttgatgctgcctcagctgcctcagcttcagataccgaatctgc-acaacaac 683
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 485 tgatgctgttgatgctgcctcagctgcctcagcttcagataccgaatctgcaacaacaac 426
Query: 684 gactacagcaactgctgctactggatatgtgatctcgatgagaagctgtgtttgcttaaa 743
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 425 gactacagcaactgctgctactggatatgtgatctcgatgagaagctgtgtttgtttaaa 366
Query: 744 c-acatggcatcgatattgaacatgattgatgaagtagagaaaagttttccattaaacca 802
| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 365 caacatggcatcgatattgaacatgattgatgaagtagagaaaagtttccaattaaacca 306
Query: 803 attgagtgaaggagtacgtgctcacgtgaccgacgacaacaattagaaaatcaattc-ga 861
||||||||||| ||||||||||||||||||||||||||||||| |||||||||| || ||
Sbjct: 305 attgagtgaagaagtacgtgctcacgtgaccgacgacaacaataagaaaatcaaatcgga 246
Query: 862 gattaagggcca 873
||||||||||||
Sbjct: 245 gattaagggcca 234
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6214
Number of Sequences: 1807
Number of extensions: 6214
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)