BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZE05RM1.SCF screened BAC_end
(941 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig189 1271 0.0
>3x_Contig189
Length = 1476
Score = 1271 bits (641), Expect = 0.0
Identities = 760/788 (96%), Gaps = 10/788 (1%)
Strand = Plus / Plus
Query: 45 cttcctggcctatacgaattcatatcgaaagattctctggtaagagtaggtatcaagagt 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 cttcctggcctatacgaattcatatcgaaagattctctggtaagagtaggtatcaagagt 749
Query: 105 gtaaaagatccaaaggacgatccaaagatcaattactttgaagaactaaagaagaaacct 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 gtaaaagatccaaaggacgatccaaagatcaattactttgaagaactaaagaagaaacct 809
Query: 165 acaaaggaatatattacaaagttgaagtcccagcaaccggaatatagaatgttcagggct 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 acaaaggaatatattacaaagttgaagtcccagcaaccggaatatagaatgttcagggct 869
Query: 225 cgttgaaatagatcgatgtgtgtatataaacgactcttttacgtataacttttgtgagag 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870 cgttgaaatagatcgatgtgtgtatataaacgactcttttacgtataacttttgtgagag 929
Query: 285 ctaatcccactatctgtaaataggctatcaaagattcaagatttaaagtcccaaatgagt 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 930 ctaatcccactatctgtaaataggctatcaaagattcaagatttaaagtcccaaatgagt 989
Query: 345 aaagtttggttgtttgtcaaactacaaaagttaatacttacgtatatttatctatttcac 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 990 aaagtttggttgtttgtcaaactacaaaagttaatacttacgtatatttatctatttcac 1049
Query: 405 acattgtccttgcaatgaacccttctaaatggtagattgctttgtttccaaggttgagac 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1050 acattgtccttgcaatgaacccttctaaatggtagattgctttgtttccaaggttgagac 1109
Query: 465 ggtgatcaaaagtgcatgcagtatcgataattgccaacttcaacggatctgactgggcat 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1110 ggtgatcaaaagtgcatgcagtatcgataattgccaacttcaacggatctgactgggcat 1169
Query: 525 ctgacagcaattgcgtcgttaattcatggactatggttttggcaggaaatac-atgggct 583
|||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 1170 ctgaaagcaattgcgtcgttaattcatggactatggttttggcagg-aatacaatgggct 1228
Query: 584 aatagatcataatttatggaacggcattctacaaggctataaacagttctttctttt-at 642
|||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||| ||
Sbjct: 1229 aatagatcataattcatggaacggcattctacaaggttattaacagttctttcttttaat 1288
Query: 643 attttcctagccattctatggatcaccaattggcaatcaggtctgttcaaaagtgtatcg 702
||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 1289 attttcctagccattttatggatcaccaattgccaatcaggtctgttcaaaggtgtatc- 1347
Query: 703 gtttctaaaatgcaattcatttttgtagtgaggtaaaattctaatgctaaaagggacatt 762
|||||| |||||||||||| |||||||||||||| | |||||| |||||| || ||||||
Sbjct: 1348 gtttcttaaatgcaattca-ttttgtagtgaggt-agattctagtgctaagagtgacatt 1405
Query: 763 ctccagttccccctttggacagattcgctatccctttctaaacaattggccctgggcaat 822
||| |||||||| || |||||||||||||| ||| |||| |||||| ||||| |||| |
Sbjct: 1406 ctcaagttcccc--tttgacagattcgctat-cctctctagacaatt-gccctcggcagt 1461
Query: 823 tatttttt 830
||||||||
Sbjct: 1462 tatttttt 1469
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,838
Number of Sequences: 1807
Number of extensions: 12838
Number of successful extensions: 85
Number of sequences better than 1.0e-20: 1
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)