BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZE06RM1.SCF screened BAC_end
(909 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1629 1364 0.0
>3x_Contig1629
Length = 12481
Score = 1364 bits (688), Expect = 0.0
Identities = 770/795 (96%), Gaps = 2/795 (0%)
Strand = Plus / Minus
Query: 52 tgaaacgaactccttgaaaactacagacaccatagaatcagattcccaagctgaaaagag 111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3572 tgaaacgaactccttgaaaactacagacaccatagaatcagattcccaagctgaaaagag 3513
Query: 112 tcttcaacccccaaaacatttgttggaaaccccagttaaagtggctgatgttgacgaaaa 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3512 tcttcaacccccaaaacatttgttggaaaccccagttaaagtggctgatgttgacgaaaa 3453
Query: 172 cggtgtggctagattcgacaagaaaagagttatgggtttcttgagacagatgaaatcgaa 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3452 cggtgtggctagattcgacaagaaaagagttatgggtttcttgagacagatgaaatcgaa 3393
Query: 232 aaataagacattggatgacaaaccactccctgaacaaacaaaaaggtttactatcccttc 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3392 aaataagacattggatgacaaaccactccctgaacaaacaaaaaggtttactatcccttc 3333
Query: 292 gtcaccagcgggtcctccaaattcaacgggtacaattgctgaaccattgacgccgaaatg 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3332 gtcaccagcgggtcctccaaattcaacgggtacaattgctgaaccattgacgccgaaatg 3273
Query: 352 ctctcaattgatgcaatttagaactggtttcactccgaattttaacattgacgagttact 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3272 ctctcaattgatgcaatttagaactggtttcactccgaattttaacattgacgagttact 3213
Query: 412 tgtgagtccgaaacttcaagaatcattgaataaaaaccttttcaaatctcctaaccaata 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3212 tgtgagtccgaaacttcaagaatcattgaataaaaaccttttcaaatctcctaaccaata 3153
Query: 472 cgtatttaaagtactgtctggagatcccctgttgatcaacgatcatcatgagacagatat 531
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 3152 cgtatttaaagtactgtctggagatcccctgttgatcaacgatcatcaggagacagatat 3093
Query: 532 tatgaatcctcctcatagccaagaagtgtcagatatattatcatttctaaattctcc-aa 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 3092 tatgaatcctcctcatagccaagaagtgtcagatatattatcatttctaaattctccaaa 3033
Query: 591 acgaggaaccaatttgagtaccccaccatctcatttggtcaatttcagctcaccaagagc 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3032 acgaggaaccaatttgagtaccccaccatctcatttggtcaatttcagctcaccaagagc 2973
Query: 651 gaatagcagatcattcgcattccatttgaacatttgtaagctgcaattgcctgcactcag 710
|||||||||| ||||||||| | ||||||||| | |||||||||||||||||||||||
Sbjct: 2972 gaatagcagaacattcgcatccaatttgaacaatgtaaagctgcaattgcctgcactcag 2913
Query: 711 cacccccaaaactgattcacatcaaagtccacatttgcagcatacatggcttccttcaac 770
||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||
Sbjct: 2912 cacccccaaaactgattcacatcaaagtcaacaattgcagcatacattgcttccttcaac 2853
Query: 771 tnccttattgaaattagcttcctactggaacgcccttccattttacacctttttttcaaa 830
| | |||||||||||||| | ||||||||||||| | || || |||||| | | ||||
Sbjct: 2852 tcctttattgaaattagc-tactactggaacgccatcacaattcacacctataatacaaa 2794
Query: 831 aacaaatgaatgatg 845
|||||||||||||||
Sbjct: 2793 aacaaatgaatgatg 2779
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6875
Number of Sequences: 1807
Number of extensions: 6875
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 909
length of database: 10,358,551
effective HSP length: 16
effective length of query: 893
effective length of database: 10,329,639
effective search space: 9224367627
effective search space used: 9224367627
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)