BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZE07FM1.SCF screened BAC_end
(949 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1636 1281 0.0
>3x_Contig1636
Length = 15667
Score = 1281 bits (646), Expect = 0.0
Identities = 697/706 (98%), Gaps = 6/706 (0%)
Strand = Plus / Plus
Query: 86 cgcaccggcgtgtagaagtggattgaatttttcgaaaactacgtcctcatcatcatcttc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4163 cgcaccggcgtgtagaagtggattgaatttttcgaaaactacgtcctcatcatcatcttc 4222
Query: 146 ttcctcgttttcgatatcttcaccaacagccaatgatagatttatttgctctctaacagg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4223 ttcctcgttttcgatatcttcaccaacagccaatgatagatttatttgctctctaacagg 4282
Query: 206 ttcaccttccaaatatccaggaggtaagtacctatgtgttctcaagacatgttcactgat 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4283 ttcaccttccaaatatccaggaggtaagtacctatgtgttctcaagacatgttcactgat 4342
Query: 266 agctctatctctgatgtcgttgatatcatccgtaaccacaaatagtaaatcgaaacgaga 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4343 agctctatctctgatgtcgttgatatcatccgtaaccacaaatagtaaatcgaaacgaga 4402
Query: 326 taatagagaatccggtagggcaatatttttatgtggatctttgttaacgtcatattgacc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4403 taatagagaatccggtagggcaatatttttatgtggatctttgttaacgtcatattgacc 4462
Query: 386 gaaaacagggtttgcagctgcgataactgaacaacgagcattcaatgttgtatgtatacc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4463 gaaaacagggtttgcagctgcgataactgaacaacgagcattcaatgttgtatgtatacc 4522
Query: 446 agcctttgcgattgttactgtttgttgttccataacttcatggatagcaactctatctac 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4523 agcctttgcgattgttactgtttgttgttccataacttcatggatagcaactctatctac 4582
Query: 506 gtcggacatcttgtcaaactcatcgatacaaacgataccacgatctgccaacaccatcgc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4583 gtcggacatcttgtcaaactcatcgatacaaacgataccacgatctgccaacaccatcgc 4642
Query: 566 acctgcttctaatcttctttcaccagtttctttatcagtagtgacggctgctgtcaaacc 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4643 acctgcttctaatcttctttcaccagtttctttatcagtagtgacggctgctgtcaaacc 4702
Query: 626 gacaccagaggaaccctttacccgtagtggcaatagctaatgctgctgtgttcaacacaa 685
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4703 gacaccagaggaa-cctctacccgtagtggcaatagctaatgctgctgtgttcaacacaa 4761
Query: 686 atctaagcatttgagatttagcggtgggatggatcaccaaccataatggatttttatgtc 745
||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||
Sbjct: 4762 atctaagcatttgagatttagcggt-ggatggatcaccaaccataa-ggatatttatgtc 4819
Query: 746 accctcttagatgtgaaccggttgggttaaattttttttcacacca 791
| ||||||||||||||||| |||||| ||||||||||| |||||||
Sbjct: 4820 a-cctcttagatgtgaacc-gttggg-taaatttttttccacacca 4862
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7100
Number of Sequences: 1807
Number of extensions: 7100
Number of successful extensions: 84
Number of sequences better than 1.0e-20: 1
length of query: 949
length of database: 10,358,551
effective HSP length: 16
effective length of query: 933
effective length of database: 10,329,639
effective search space: 9637553187
effective search space used: 9637553187
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)