BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZE07RM1.SCF screened BAC_end
(980 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1236 1007 0.0
>3x_Contig1236
Length = 4331
Score = 1007 bits (508), Expect = 0.0
Identities = 572/588 (97%), Gaps = 4/588 (0%)
Strand = Plus / Minus
Query: 45 gcttccgattgagaaatccgaaagtatgattaccaagagatgttgtcttgattcagaaca 104
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 585 gcttccgattgagaaatccgaaag-atgattaccaagagatgttgtcttgattcagaaca 527
Query: 105 attttccttttcaaataatctaacctctgtctatcccatctgcgagcttcaattgtagtc 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 attttccttttcaaataatctaacctctgtctatcccatctgcgagcttcaattgtagtc 467
Query: 165 ttcattctgatgcatgaaaggaccagaagtgccacggtcttgaattttatcttttgatga 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 ttcattctgatgcatgaaaggaccagaagtgccacggtcttgaattttatcttttgatga 407
Query: 225 gagaatcgcatattgtggaatggtatatctgcatatgggttgtaaactggtacttcgttc 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 gagaatcgcatattgtggaatggtatatctgcatatgggttgtaaactggtacttcgttc 347
Query: 285 tgtaacttcagaatgtctaatttgacgtgttgagaacttgcccttaagacacggtttaga 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 tgtaacttcagaatgtctaatttgacgtgttgagaacttgcccttaagacacggtttaga 287
Query: 345 tattggttcattgtcttcaagtcattattttgtttaacttcattggcatactttaagcgg 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 tattggttcattgtcttcaagtcattattttgtttaacttcattggcatactttaagcgg 227
Query: 405 taataatcaatctcatcctttagggttcccttctcagtagtttttgagaagacctctgct 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 taataatcaatctcatcctttagggttcccttctcagtagtttttgagaagacctctgct 167
Query: 465 gtggaaattggatttgccttctgtttc-ataaactcttctgcaacttcaaattttcgtct 523
|||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct: 166 gtggaatttggatttgccttctgtttcaataaactcttctgcaactccaaattttcgtct 107
Query: 524 tggagtgacttcaacttccccaaaaaatttgtcctttatgggatgatatttggaatccca 583
||||||||||||||| ||||| |||||||||||||| |||| ||||||||||||| |||
Sbjct: 106 tggagtgacttcaac-tcccccaaaaatttgtccttcatggattgatatttggaatacca 48
Query: 584 tttattgttcagattatctttcgcattttctggatttttctgcttgtt 631
||||||||||| | ||||||||||| |||| || |||||||||||||
Sbjct: 47 tttattgttcataaaatctttcgcatcttct-gagttttctgcttgtt 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,563
Number of Sequences: 1807
Number of extensions: 12563
Number of successful extensions: 97
Number of sequences better than 1.0e-20: 1
length of query: 980
length of database: 10,358,551
effective HSP length: 16
effective length of query: 964
effective length of database: 10,329,639
effective search space: 9957771996
effective search space used: 9957771996
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)