BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZE08FM1.SCF screened BAC_end
(908 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1586 955 0.0
3x_Contig83 906 0.0
>3x_Contig1586
Length = 12315
Score = 955 bits (482), Expect = 0.0
Identities = 487/489 (99%)
Strand = Plus / Plus
Query: 95 tttagcacacggacagaggcacgaacgttaaggttgttgtgtctgtgttaccgtgattct 154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9978 tttagcacacggacagaggcacgaacgttaaggttgttgtgtctgtgttaccgtgattct 10037
Query: 155 aacccactaagccaaaagttcgtggtaagggaaatttggactgaaactgtgaccacagct 214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10038 aacccactaagccaaaagttcgtggtaagggaaatttggactgaaactgtgaccacagct 10097
Query: 215 tcgctgtggtcgcctactgaatttctatgcagtgaagtaatcgtaaacggagaaaaagac 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10098 tcgctgtggtcgcctactgaatttctatgcagtgaagtaatcgtaaacggagaaaaagac 10157
Query: 275 agactatagccattctgataatttcgcagcatatgacgaaattgctgtaccggtctgatt 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10158 agactatagccattctgataatttcgcagcatatgacgaaattgctgtaccggtctgatt 10217
Query: 335 caagtcatttcacctcctgatttgtaaacgttttgtgctccgttgagaaacggtgagaat 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10218 caagtcatttcacctcctgatttgtaaacgttttgtgctccgttgagaaacggtgagaat 10277
Query: 395 gactatatctctcatactatttttttcttttttttttggcgggttacaactgttatcgtg 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10278 gactatatctctcatactatttttttcttttttttttggcgggttacaactgttatcgtg 10337
Query: 455 gggttttgggccaactggatgcagttgttaattcttgccttatcatactgttgctgtatt 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10338 gggttttgggccaactggatgcagttgttaattcttgccttatcatactgttgctgtatt 10397
Query: 515 tcatatttcttatataaagagttgttttttcctctgngttagttctctgatttatgaagt 574
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 10398 tcatatttcttatataaagagttgttttttcctctgtgttagttctctgatttatgaagt 10457
Query: 575 ttgtaaaaa 583
|||| ||||
Sbjct: 10458 ttgtgaaaa 10466
>3x_Contig83
Length = 1004
Score = 906 bits (457), Expect = 0.0
Identities = 485/492 (98%), Gaps = 2/492 (0%)
Strand = Plus / Plus
Query: 95 tttagcacacggacagaggcacgaacgttaaggttgttgtgtctgtgttaccgtgattct 154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 tttagcacacggacagaggcacgaacgttaaggttgttgtgtctgtgttaccgtgattct 519
Query: 155 aacccactaagccaaaagttcgtggtaagggaaatttggactgaaactgtgaccacagct 214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 aacccactaagccaaaagttcgtggtaagggaaatttggactgaaactgtgaccacagct 579
Query: 215 tcgctgtggtcgcctactgaatttctatgcagtgaagtaatcgtaaacggagaaaaagac 274
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 tcgc-gtg-tcgcctactgaatttctatgcagtgaagtaatcgtaaacggagaaaaagac 637
Query: 275 agactatagccattctgataatttcgcagcatatgacgaaattgctgtaccggtctgatt 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 agactatagccattctgataatttcgcagcatatgacgaaattgctgtaccggtctgatt 697
Query: 335 caagtcatttcacctcctgatttgtaaacgttttgtgctccgttgagaaacggtgagaat 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 caagtcatttcacctcctgatttgtaaacgttttgtgctccgttgagaaacggtgagaat 757
Query: 395 gactatatctctcatactatttttttcttttttttttggcgggttacaactgttatcgtg 454
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 758 gactatatctctcatactatttttctcttttttttttggcgggttacaactgttatcgtg 817
Query: 455 gggttttgggccaactggatgcagttgttaattcttgccttatcatactgttgctgtatt 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 gggttttgggccaactggatgcagttgttaattcttgccttatcatactgttgctgtatt 877
Query: 515 tcatatttcttatataaagagttgttttttcctctgngttagttctctgatttatgaagt 574
|||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||
Sbjct: 878 tcatatttcttatataaacacttgttttttcctctgtgttagttctctgatttatgaagt 937
Query: 575 ttgtaaaaataa 586
|||| |||||||
Sbjct: 938 ttgttaaaataa 949
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8200
Number of Sequences: 1807
Number of extensions: 8200
Number of successful extensions: 195
Number of sequences better than 1.0e-20: 2
length of query: 908
length of database: 10,358,551
effective HSP length: 16
effective length of query: 892
effective length of database: 10,329,639
effective search space: 9214037988
effective search space used: 9214037988
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)