BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZE08RM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1693 1094 0.0
>3x_Contig1693
Length = 15531
Score = 1094 bits (552), Expect = 0.0
Identities = 598/611 (97%), Gaps = 2/611 (0%)
Strand = Plus / Plus
Query: 49 gtatctcttcttaccggcttctctccatcttaccaagtcttcgtattcttcttgggccat 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14833 gtatctcttcttaccggcttctctccatcttaccaagtcttcgtattcttcttgggccat 14892
Query: 109 ggtggaagcggttt-accccaaccttccaaggccttagcagccttttgagccaggaactc 167
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14893 ggtggaagcggtttcaccccaaccttccaaggccttagcagccttttgagccaggaactc 14952
Query: 168 ttcgtccttacccttgtaggtgaaccaaccgtcttccttgattttcttgaaacgatccaa 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14953 ttcgtccttacccttgtaggtgaaccaaccgtcttccttgattttcttgaaacgatccaa 15012
Query: 228 tcttctttgagcttcacttggtcctatttgtctgttcctcaccttctcctccatctcttc 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15013 tcttctttgagcttcacttggtcctatttgtctgttcctcaccttctcctccatctcttc 15072
Query: 288 ctttgctaagagttcggcagtttcaccccatccagaaacactatggctggcaatagagtc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15073 ctttgctaagagttcggcagtttcaccccatccagaaacactatggctggcaatagagtc 15132
Query: 348 tggatcaacaacctccgcgtcggccttacctcttaaccaactcaagaaccctttacgtct 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15133 tggatcaacaacctccgcgtcggccttacctcttaaccaactcaagaaccctttacgtct 15192
Query: 408 cagctcttcttcgttgtcgtgtacttggttggccagcttgttgaagtcattggtggtctt 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15193 cagctcttcttcgttgtcgtgtacttggttggccagcttgttgaagtcattggtggtctt 15252
Query: 468 ctcagagaattccctagtggcttcatccactcttctcttggcatcttncacgtacgcctt 527
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 15253 ctcagagaattccctagtggcttcatccactcttctcttggcatcttccacgtacgcctt 15312
Query: 528 accctgatcaccttgcctttgcaattctgggttaccttttccg-aaaggcccttctttga 586
| |||||||| ||||||||||||||||||||| |||||| ||| ||||||||||||||||
Sbjct: 15313 agcctgatcaacttgcctttgcaattctgggtcacctttaccgaaaaggcccttctttga 15372
Query: 587 cttgttgaaccttttctccaactcttggtattttttgcttgctttatcgaaattgttgat 646
|| ||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 15373 ctcgttgaacctttcttccaactcttggtattttttgcttgcattatcgtaattgttgat 15432
Query: 647 aacttgagcac 657
| |||||||||
Sbjct: 15433 agcttgagcac 15443
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6408
Number of Sequences: 1807
Number of extensions: 6408
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)