BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC36ZE09FM1.SCF screened BAC_end
         (916 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1394                                                        1185   0.0  

>3x_Contig1394 
          Length = 5721

 Score = 1185 bits (598), Expect = 0.0
 Identities = 702/730 (96%), Gaps = 5/730 (0%)
 Strand = Plus / Minus

                                                                        
Query: 87   ctgaatcctccacttcctcccaatcttccagttcttcgtcatctggtagtacttcaacct 146
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1212 ctgaatcctccacttcctcccaatcttccagttcttcgtcatctggtagtacttcaacct 1153

                                                                        
Query: 147  ctaccagcagttccggtgatctatcatggttctcctctccaactgaggaattcgaagacg 206
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1152 ctaccagcagttccggtgatctatcatggttctcctctccaactgaggaattcgaagacg 1093

                                                                        
Query: 207  gtgtgatgtcctgtgacgaattcccatccggtcaaggtgttgtctacctagattggttag 266
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1092 gtgtgatgtcctgtgacgaattcccatccggtcaaggtgttgtctacctagattggttag 1033

                                                                        
Query: 267  gattcggtggttggtccggtatcgaaaattcggacggttctaccggtggtacttgtaaag 326
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1032 gattcggtggttggtccggtatcgaaaattcggacggttctaccggtggtacttgtaaag 973

                                                                        
Query: 327  aaggttcttactgttcttacgcttgtcaaccaggtatgtccaagacccaatacccatctg 386
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 972  aaggttcttactgttcttacgcttgtcaaccaggtatgtccaagacccaatacccatctg 913

                                                                        
Query: 387  atcaaccatcaaatggtgtctccatcggtggtttgctatgtaagaatggtaagctttacc 446
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 912  atcaaccatcaaatggtgtctccatcggtggtttgctatgtaagaatggtaagctttacc 853

                                                                        
Query: 447  gttccaacactgacgaaaagtacttgtgtacttggggtattgacagtgcctacgtcgtta 506
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852  gttccaacactgacgaaaagtacttgtgtacttggggtattgacagtgcctacgtcgtta 793

                                                                        
Query: 507  acgaattgtctgacgtcgtctccatctgtagaaccgattacccaggtactgaaaacatgg 566
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792  acgaattgtctgacgtcgtctccatctgtagaaccgattacccaggtactgaaaacatgg 733

                                                                        
Query: 567  ttatcccaactattgtcaacggtgggtagcaagttaccattgaccgttgtcgaccaggat 626
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 732  ttatcccaactattgtcaacggt-ggtagcaagttaccattgaccgttgtcgaccaggat 674

                                                                        
Query: 627  ac-tactacacatgggcaggaatgaagacatcggcttcatactacgttaacaatgctggt 685
            || ||||||||||||  |||||||||||||||||||  ||||||||||||||||||||||
Sbjct: 673  acatactacacatggcaaggaatgaagacatcggctcaatactacgttaacaatgctggt 614

                                                                        
Query: 686  ggttttaaagaagatgtttgtgtctggggtacttttggggtccggtattggtaactgggc 745
            | || ||| || |||| ||||||||||||||||| | ||||| |||||||||||||||||
Sbjct: 613  gtttctaaggaggatggttgtgtctggggtacttct-gggtctggtattggtaactgggc 555

                                                                        
Query: 746  ctcattgaacctttggggcgggggccactggcgggattcctttatcggccttggattcca 805
              ||||||| ||| || || || ||||||||||| | ||  ||||| | ||| |||||||
Sbjct: 554  tccattgaa-cttcggtgctggtgccactggcggta-tctcttatctgtctttgattcca 497

                      
Query: 806  aacccaaaca 815
            ||||||||||
Sbjct: 496  aacccaaaca 487


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4485
Number of Sequences: 1807
Number of extensions: 4485
Number of successful extensions: 28
Number of sequences better than 1.0e-20: 1
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)