BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC36ZE09FM1.SCF screened BAC_end (916 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1394 1185 0.0 >3x_Contig1394 Length = 5721 Score = 1185 bits (598), Expect = 0.0 Identities = 702/730 (96%), Gaps = 5/730 (0%) Strand = Plus / Minus Query: 87 ctgaatcctccacttcctcccaatcttccagttcttcgtcatctggtagtacttcaacct 146 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1212 ctgaatcctccacttcctcccaatcttccagttcttcgtcatctggtagtacttcaacct 1153 Query: 147 ctaccagcagttccggtgatctatcatggttctcctctccaactgaggaattcgaagacg 206 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1152 ctaccagcagttccggtgatctatcatggttctcctctccaactgaggaattcgaagacg 1093 Query: 207 gtgtgatgtcctgtgacgaattcccatccggtcaaggtgttgtctacctagattggttag 266 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1092 gtgtgatgtcctgtgacgaattcccatccggtcaaggtgttgtctacctagattggttag 1033 Query: 267 gattcggtggttggtccggtatcgaaaattcggacggttctaccggtggtacttgtaaag 326 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1032 gattcggtggttggtccggtatcgaaaattcggacggttctaccggtggtacttgtaaag 973 Query: 327 aaggttcttactgttcttacgcttgtcaaccaggtatgtccaagacccaatacccatctg 386 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 972 aaggttcttactgttcttacgcttgtcaaccaggtatgtccaagacccaatacccatctg 913 Query: 387 atcaaccatcaaatggtgtctccatcggtggtttgctatgtaagaatggtaagctttacc 446 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 912 atcaaccatcaaatggtgtctccatcggtggtttgctatgtaagaatggtaagctttacc 853 Query: 447 gttccaacactgacgaaaagtacttgtgtacttggggtattgacagtgcctacgtcgtta 506 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 852 gttccaacactgacgaaaagtacttgtgtacttggggtattgacagtgcctacgtcgtta 793 Query: 507 acgaattgtctgacgtcgtctccatctgtagaaccgattacccaggtactgaaaacatgg 566 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 792 acgaattgtctgacgtcgtctccatctgtagaaccgattacccaggtactgaaaacatgg 733 Query: 567 ttatcccaactattgtcaacggtgggtagcaagttaccattgaccgttgtcgaccaggat 626 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 732 ttatcccaactattgtcaacggt-ggtagcaagttaccattgaccgttgtcgaccaggat 674 Query: 627 ac-tactacacatgggcaggaatgaagacatcggcttcatactacgttaacaatgctggt 685 || |||||||||||| ||||||||||||||||||| |||||||||||||||||||||| Sbjct: 673 acatactacacatggcaaggaatgaagacatcggctcaatactacgttaacaatgctggt 614 Query: 686 ggttttaaagaagatgtttgtgtctggggtacttttggggtccggtattggtaactgggc 745 | || ||| || |||| ||||||||||||||||| | ||||| ||||||||||||||||| Sbjct: 613 gtttctaaggaggatggttgtgtctggggtacttct-gggtctggtattggtaactgggc 555 Query: 746 ctcattgaacctttggggcgggggccactggcgggattcctttatcggccttggattcca 805 ||||||| ||| || || || ||||||||||| | || ||||| | ||| ||||||| Sbjct: 554 tccattgaa-cttcggtgctggtgccactggcggta-tctcttatctgtctttgattcca 497 Query: 806 aacccaaaca 815 |||||||||| Sbjct: 496 aacccaaaca 487 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4485 Number of Sequences: 1807 Number of extensions: 4485 Number of successful extensions: 28 Number of sequences better than 1.0e-20: 1 length of query: 916 length of database: 10,358,551 effective HSP length: 16 effective length of query: 900 effective length of database: 10,329,639 effective search space: 9296675100 effective search space used: 9296675100 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)