BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZE09RM1.SCF screened BAC_end
(921 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig873 995 0.0
>3x_Contig873
Length = 2159
Score = 995 bits (502), Expect = 0.0
Identities = 557/570 (97%), Gaps = 4/570 (0%)
Strand = Plus / Plus
Query: 52 aagaaattctcttcggtca-ctgtttcttgatttgtttttccaaa-ggatcttcgctagg 109
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1362 aagaaattctcttcggtcaactgtttcttgatttgtttttccaaaaggatcttcgctagg 1421
Query: 110 aaaggatcctgtttcacagatccgtatttagaattttcca-cgattcctggaaagctttt 168
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1422 aaaggatcctgtttcacagatccgtatttagaattttccaacgattcctggaaagctttt 1481
Query: 169 aaacgaattttggtttcctgaagttccttgttacatgaatttttgaaatctgactctaaa 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1482 aaacgaattttggtttcctgaagttccttgttacatgaatttttgaaatctgactctaaa 1541
Query: 229 gattgaatttctttaattttcaccaatagatcacgtctcatatcctctaatctggggatc 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1542 gattgaatttctttaattttcaccaatagatcacgtctcatatcctctaatctggggatc 1601
Query: 289 acatcttgactcaattccttggaggcctttgatgctgcatggaccatttgcgtatggtac 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1602 acatcttgactcaattccttggaggcctttgatgctgcatggaccatttgcgtatggtac 1661
Query: 349 tgattaaataaggtgggtagatcctgaatagatccgtgccctagaggcaaaaagaatttt 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1662 tgattaaataaggtgggtagatcctgaatagatccgtgccctagaggcaaaaagaatttt 1721
Query: 409 tgaatgttcttgtcctctggagtggtaggttgatgttggctatcaatggtgaaaaatggg 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1722 tgaatgttcttgtcctctggagtggtaggttgatgttggctatcaatggtgaaaaatggg 1781
Query: 469 aagttaattgcatgctgcaatctcaaatgttgtctttacactttatcttggatggaaaac 528
|||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
Sbjct: 1782 aagttaattgcatgctgcaatctcaaatgttgtcttacaacttcatcttggatggaaacc 1841
Query: 529 gtttcttgtagatattcaagaagtgatctgataatacttcttcatgctgcaaatctctga 588
||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 1842 gtttcttgtagatatacaagaagtgatctgataatacctctccatgctgcaaatctctga 1901
Query: 589 gagagaccttctgtaagggttcgcattagt 618
|||||| ||||||| |||||||||||||||
Sbjct: 1902 gagagaacttctgt-agggttcgcattagt 1930
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8965
Number of Sequences: 1807
Number of extensions: 8965
Number of successful extensions: 67
Number of sequences better than 1.0e-20: 1
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)