BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZE11FM1.SCF screened BAC_end
(943 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1698 1213 0.0
>3x_Contig1698
Length = 21001
Score = 1213 bits (612), Expect = 0.0
Identities = 728/756 (96%), Gaps = 8/756 (1%)
Strand = Plus / Minus
Query: 88 tcaatctacaacactgaaactatacaagtttgacagttgcaattcgttagtaggtcttat 147
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 7048 tcaatctacaacactgaa-cgatacaagtttgacagttgcaattcgttagtaggtcttat 6990
Query: 148 tcattttcctgttaactgttatttaattattattatttaatattgcatttcatattgctc 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6989 tcattttcctgttaactgttatttaattattattatttaatattgcatttcatattgctc 6930
Query: 208 cttttatttgggctttacggtatctcttttaacattttacaaccacaacttcaccctttt 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6929 cttttatttgggctttacggtatctcttttaacattttacaaccacaacttcaccctttt 6870
Query: 268 ccagattataatcatgtctctagctaaatccgccgctaacaaattagactgggctaatgt 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 6869 ccagattataatcatgtctctagctaaatccgccgctaacaaattagactgggctaaggt 6810
Query: 328 catttcttctttgaaattgactggtaagactgccacccaattgtcctctttcatgaagat 387
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 6809 catttcttctttgaaattgactggtaagactgccacccaattgtcctctttcaagaagag 6750
Query: 388 aaacgatgaagcccgtagacagttattggaattgcaaagtcaacctacgtctgttgattt 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6749 aaacgatgaagcccgtagacagttattggaattgcaaagtcaacctacgtctgttgattt 6690
Query: 448 ctcccattacagatctgtcttgaagaacaccgaagtcgtcgataagattgaacaattcta 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6689 ctcccattacagatctgtcttgaagaacaccgaagtcgtcgataagattgaacaattcta 6630
Query: 508 caaatcttacaagccagtctccgttgatgtctccaagcaactgtctaccattgaagcctt 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6629 caaatcttacaagccagtctccgttgatgtctccaagcaactgtctaccattgaagcctt 6570
Query: 568 tgaatctcaagccattgaaaatgctgctgagactgataagttggtcgctcaagaattgaa 627
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 6569 tgaatctcaagccattgaaaatgctgctgagactgaaaagttggtcgctcaagaattgaa 6510
Query: 628 tgacttgaaggaaactttgaacaacatcgaatccgctagaccattcgaccaattgactgt 687
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6509 ggacttgaaggaaactttgaacaacatcgaatccgctagaccattcgaccaattgactgt 6450
Query: 688 ggaccgaattgaccaaagctatacctgaaatcgatgccaaagttgaagaatatggtaaaa 747
||| |||||||||||| |||| |||||||||||||||||| || |||| | ||||| ||
Sbjct: 6449 gga-cgaattgaccaaggctagacctgaaatcgatgccaaggtggaag-agatggttaag 6392
Query: 748 atagttagatggggacgttccaggttacaaaggaaattttcggggatttgactattattg 807
| | ||||| ||||||||||||||||| ||||| | ||||| ||||||||||||| ||
Sbjct: 6391 aagggtagat-gggacgttccaggttac-aaggagaagttcggtgatttgactatta-tg 6335
Query: 808 tgattaaggcgatgacaataaaattttccctgtgcc 843
||| |||||||||||||| |||||||||||||||||
Sbjct: 6334 tga-taaggcgatgacaa-aaaattttccctgtgcc 6301
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8115
Number of Sequences: 1807
Number of extensions: 8115
Number of successful extensions: 83
Number of sequences better than 1.0e-20: 1
length of query: 943
length of database: 10,358,551
effective HSP length: 16
effective length of query: 927
effective length of database: 10,329,639
effective search space: 9575575353
effective search space used: 9575575353
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)