BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZE11RM1.SCF screened BAC_end
(945 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig715 1302 0.0
>3x_Contig715
Length = 2727
Score = 1302 bits (657), Expect = 0.0
Identities = 782/805 (97%), Gaps = 14/805 (1%)
Strand = Plus / Plus
Query: 45 cttcttatctgaagctacgggctttgtcgtgaaaatgtcgcaaccacctgtgatactgca 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1029 cttcttatctgaagctacgggctttgtcgtgaaaatgtcgcaaccacctgtgatactgca 1088
Query: 105 gtccgaggtctcgaaattaagagcctggttaacaacctctaaatcaaattcatcgataaa 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1089 gtccgaggtctcgaaattaagagcctggttaacaacctctaaatcaaattcatcgataaa 1148
Query: 165 ctttaaaagatgttaagtaacacatgatgcaaaaaatatacatacatgccgttaatataa 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1149 ctttaaaagatgttaagtaacacatgatgcaaaaaatatacatacatgccgttaatataa 1208
Query: 225 ggttagtattccgtttgttcattatgaatatgtcagaactatattaaaacacgattattc 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1209 ggttagtattccgtttgttcattatgaatatgtcagaactatattaaaacacgattattc 1268
Query: 285 gcataccttcattattgcaggttaattggaagcggtgaaacgtttgaaaataaaacagta 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1269 gcataccttcattattgcaggttaattggaagcggtgaaacgtttgaaaataaaacagta 1328
Query: 345 ttcttgagagctcaaagacacactgtgctagattcaactaaattgacggcctcctatcaa 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1329 ttcttgagagctcaaagacacactgtgctagattcaactaaattgacggcctcctatcaa 1388
Query: 405 gcttgttatggttggctgttcgaaaactcattgtaagggcagcgttatcggtctttgtga 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1389 gcttgttatggttggctgttcgaaaactcattgtaagggcagcgttatcggtctttgtga 1448
Query: 465 taatttcaactcagcacatgttacttcgagaaacgggaacgcgcattaaaaggtcgggta 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1449 taatttcaactcagcacatgttacttcgagaaacgggaacgcgcattaaaaggtcgggta 1508
Query: 525 accctcagttatgatgccacagctaggtgagttgaaagcagacagcaccattgaacagaa 584
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1509 accctcagttatgaggccacagctaggtgagttgaaagcagacagcaccattgaacagaa 1568
Query: 585 gctaccatctccaagctaacattgacattctatagtcaaaaagaaagttgc-ttatgtat 643
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct: 1569 gctaccatctccaagctaacattgacattctatagtcaaaaag-aagttgctttatgtat 1627
Query: 644 gttcctgtatgtacatattcgtggcaa-cacaactttttatgcggtgaaagaatt-aagt 701
||||||||||||||| || |||||||| |||||||||||||||||| |||||||| ||||
Sbjct: 1628 gttcctgtatgtacaaatccgtggcaaccacaactttttatgcggt-aaagaattaaagt 1686
Query: 702 attatgatattagcaaattaatgttacttatgtgaaattaatggtcgttagaggaggagc 761
||||||||||||| ||||||||||||| |||||||||| ||| || |||||| |||||||
Sbjct: 1687 attatgatattag-aaattaatgttac-tatgtgaaataaat-gttgttaga-gaggagc 1742
Query: 762 ttgctctgtggagtgaacgattactatttgatagtccgttttataaattccattctgctc 821
||||||||| ||||||||||| |||| | |||||||||||||||| | |||| |||||||
Sbjct: 1743 ttgctctgt-gagtgaacgataacta-tagatagtccgttttataga-tccagtctgctc 1799
Query: 822 caattaagatctgcctccttgatcc 846
||||| ||||||| |||||||||||
Sbjct: 1800 caatt-agatctg-ctccttgatcc 1822
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6507
Number of Sequences: 1807
Number of extensions: 6507
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 945
length of database: 10,358,551
effective HSP length: 16
effective length of query: 929
effective length of database: 10,329,639
effective search space: 9596234631
effective search space used: 9596234631
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)