BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZE12FM1.SCF screened BAC_end
(993 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1606 954 0.0
>3x_Contig1606
Length = 11468
Score = 954 bits (481), Expect = 0.0
Identities = 532/545 (97%), Gaps = 3/545 (0%)
Strand = Plus / Plus
Query: 86 atcgatggctaacgacgcatcaatcctctttgcttgactaagtcgaaggaataatcgaca 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5880 atcgatggctaacgacgcatcaatcctctttgcttgactaagtcgaaggaataatcgaca 5939
Query: 146 gaaaattgtatcttccctgataatgcgctgcagatgcgccgtcctcatacttgcaactat 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5940 gaaaattgtatcttccctgataatgcgctgcagatgcgccgtcctcatacttgcaactat 5999
Query: 206 caacacgtatatttttaaccgctagcaacacacctgcccttaaagtacgagtgatcgcag 265
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6000 caacacgtatatcgctaaccgctagcaacacacctgcccttaaagtacgagtgatcgcag 6059
Query: 266 cactgttaagtagtaaaatggtaatgcaaaattaaaagtaaatttatttacatgaacaaa 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6060 cactgttaagtagtaaaatggtaatgcaaaattaaaagtaaatttatttacatgaacaaa 6119
Query: 326 atagatagggtagataaaacataatataacattaaaatgaaagagaaagtgggtacgatg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6120 atagatagggtagataaaacataatataacattaaaatgaaagagaaagtgggtacgatg 6179
Query: 386 tgagcttgactctgacaatcaaaagtagaaatccaaccgatgtatacaatacgcgggggg 445
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 6180 tgagcttgactctgacaatcaaaagtagaaatccaaccgaggtatacaatacgcgggggg 6239
Query: 446 aagtcctgtcgagctctactttc-aaagcctcaaac-gcaatttcaaacaggcaaagcga 503
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct: 6240 aagtcctgtcgagctctactttcaaaagcctcaaacggcaatttcaaacaggcaaagcga 6299
Query: 504 tataatttcccgcctttcgttagttacctcctcccctctcttcattcttagctaaagaag 563
||||||| |||||||| |||| ||||||||| |||||||||||||||||||| ||||||
Sbjct: 6300 tataattccccgccttccgttgtttacctcct-ccctctcttcattcttagcttaagaag 6358
Query: 564 aaattcatttgaattgcttcttaatgaagtgccagatcaatggagacaaccattaagcgg 623
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 6359 aaattcatttgaattgcttcttaatgaagtgccagatcaatggagacaaccataaagcgg 6418
Query: 624 cagct 628
|||||
Sbjct: 6419 cagct 6423
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8660
Number of Sequences: 1807
Number of extensions: 8660
Number of successful extensions: 76
Number of sequences better than 1.0e-20: 1
length of query: 993
length of database: 10,358,551
effective HSP length: 16
effective length of query: 977
effective length of database: 10,329,639
effective search space: 10092057303
effective search space used: 10092057303
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)