BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZE12RM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig774 985 0.0
>3x_Contig774
Length = 2612
Score = 985 bits (497), Expect = 0.0
Identities = 591/613 (96%), Gaps = 7/613 (1%)
Strand = Plus / Minus
Query: 54 ttccctcaagaaggttcaatgcatccgggttggcatttgggtataaagtgctgaatggta 113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2021 ttccctcaagaaggttcaatgcatccgggttggcatttgggtataaagtgctgaatggta 1962
Query: 114 tctttggaatatatcctagctggtggatatagtcttggacgtttttcgatccgattcttt 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1961 tctttggaatatatcctagctggtggatatagtcttggacgtttttcgatccgattcttt 1902
Query: 174 tcaaagtttcctctggaggagtccccaagacttgtaagatcctattcaattggtcgacgt 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1901 tcaaagtttcctctggaggagtccccaagacttgtaagatcctattcaattggtcgacgt 1842
Query: 234 aatctttacccttaaagataggtttcccacctagcaattccgccaagatacaaccacaag 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1841 aatctttacccttaaagataggtttcccacctagcaattccgccaagatacaaccacaag 1782
Query: 294 accatacgtcaatagcctttgtataaccttgatagctcaacataatttccggtgctctgt 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1781 accatacgtcaatagcctttgtataaccttgatagctcaacataatttccggtgctctgt 1722
Query: 354 accatctcgttgccacgtattcggtcaaaaattggttattttctactggattctcgctgt 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1721 accatctcgttgccacgtattcggtcaaaaattggttattttctactggattctcgctgt 1662
Query: 414 accctctggccaatccgaaatcacaaatcttcaactgacaatcagcgttaaccaaaagat 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1661 accctctggccaatccgaaatcacaaatcttcaactgacaatcagcgttaaccaaaagat 1602
Query: 474 tccctggcttcaaatcacgatgggagcacgtctgctgaatgaatttattttaaacccac- 532
||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||
Sbjct: 1601 tccctggcttcaaatcacgat-ggagcacgtctgctgaatgaatatatttt-aacccaca 1544
Query: 533 aagaatttgggtagatgaacgattggttatgggcatttgtttaaaacctgacccgaattt 592
|||||| | |||||||||||||||||| |||||||| || |||| |||||||| ||||
Sbjct: 1543 aagaatct-ggtagatgaacgattggtaatgggcatctg-ttaagggctgacccg-attt 1487
Query: 593 tacaattggatgcttataacattcctttatttcctcgtccaaat-aagaccattgaacat 651
||||||| ||||| ||| ||||||| ||| |||||||| ||||| |||||||||||||||
Sbjct: 1486 tacaatttgatgcatatcacattccattaattcctcgtacaaataaagaccattgaacat 1427
Query: 652 cccgcccggctgg 664
||| ||||||||
Sbjct: 1426 accgtccggctgg 1414
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,342
Number of Sequences: 1807
Number of extensions: 13342
Number of successful extensions: 74
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)