BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC36ZF01FM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1546 1352 0.0
>3x_Contig1546
Length = 12922
Score = 1352 bits (682), Expect = 0.0
Identities = 774/798 (96%), Gaps = 5/798 (0%)
Strand = Plus / Plus
Query: 87 cacaagatcaccatacttacaaagaattgcttgacgccattgtcacagactatgaaagcg 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8098 cacaagatcaccatacttacaaagaattgcttgacgccattgtcacagactatgaaagcg 8157
Query: 147 atgctatcttttcgaataacgacgcacaaacagaaaatgactccatgtcagaatgtgact 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8158 atgctatcttttcgaataacgacgcacaaacagaaaatgactccatgtcagaatgtgact 8217
Query: 207 cccctcatgagttcgacactctaactgattcctcgagaagtacaccagcagttgttccac 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8218 cccctcatgagttcgacactctaactgattcctcgagaagtacaccagcagttgttccac 8277
Query: 267 agagtttacgcgaaagcttttcgtcattagctaatttccaaacctctgtgaaagccggtg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8278 agagtttacgcgaaagcttttcgtcattagctaatttccaaacctctgtgaaagccggtg 8337
Query: 327 ttcggagaaatctaacattacctgtaggtatcagcatctgatatctcatttcaatacatt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8338 ttcggagaaatctaacattacctgtaggtatcagcatctgatatctcatttcaatacatt 8397
Query: 387 agcattaggagagagcccatttattattgacatatttttcctggacataactcccttctt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8398 agcattaggagagagcccatttattattgacatatttttcctggacataactcccttctt 8457
Query: 447 ccacctcccctcattagcattacaacatcattgattcctatatattcatattaagataac 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8458 ccacctcccctcattagcattacaacatcattgattcctatatattcatattaagataac 8517
Query: 507 cacgtttgttgttcatatttatcgcatttctagttctcaacagatagagtcagatataga 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8518 cacgtttgttgttcatatttatcgcatttctagttctcaacagatagagtcagatataga 8577
Query: 567 cagggttgtttaattaactttatctgatgattctatcatttttgaatttattctctttag 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8578 cagggttgtttaattaactttatctgatgattctatcatttttgaatttattctctttag 8637
Query: 627 gcaggtcaacagatttaagatcgggtgcgagaccttgcattgaaatgtctgtataaaatt 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8638 gcaggtcaacagatttaagatcgggtgcgagaccttgcattgaaatgtctgtataaaatt 8697
Query: 687 tatgaagcaatctgcacatcggttt-acgtaccacctgttcaagttcatgttcaaccatc 745
|||||||||||||||||| |||||| ||||||||||||| ||||||||||| |||||||
Sbjct: 8698 tatgaagcaatctgcacaacggtttcacgtaccacctgtccaagttcatgtcaaaccatc 8757
Query: 746 caatgtgacctccccttgtatttgtttacattaagg-ggacggattactttggactt-aa 803
|||||||||||||||||||| ||||| ||||||||| | |||||||||||||||||| |
Sbjct: 8758 caatgtgacctccccttgtagttgttaacattaaggtgtacggattactttggacttcac 8817
Query: 804 gaattggta-cgctttacattccacaataggattctctaaggcattc-ggatcagtaagg 861
|| ||||| ||||| |||| | |||||||||| |||||||||||| | |||||||| |
Sbjct: 8818 gatatggtagcgcttcacatccaacaataggatcatctaaggcattcagaatcagtaatg 8877
Query: 862 gaattctcaacctgttta 879
|| |||||||| ||||||
Sbjct: 8878 gagttctcaacttgttta 8895
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6157
Number of Sequences: 1807
Number of extensions: 6157
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)